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Forum: SOLiD 12-04-2008, 10:10 AM
Replies: 0
Views: 6,117
Posted By wesb
Simulate ABI reads

Anyone know of any programs that can simulate ABI Solid reads?
Forum: Bioinformatics 07-15-2008, 10:32 AM
Replies: 14
Views: 14,707
Posted By wesb
Reference

For Maq, I split the reference by chromosome and submit each Maq run for a given chromosome to a different node on my cluster. With Soap, I do the same thing. It also works for me to split the...
Forum: General 07-11-2008, 06:37 AM
Replies: 3
Views: 4,526
Posted By wesb
WikiLIMS for Solid

Great! We are getting a Solid machine in August. Has anyone set up wikiLIMS to be used for a Solid machine?
Forum: General 07-10-2008, 02:17 PM
Replies: 3
Views: 4,526
Posted By wesb
Bioteam's WikiLIMS

Has anyone had any experience with Bioteam's WikiLIMS to manage a nextgen machine?

http://bioteam.net/specialty/nextGenSeq.html
Forum: Bioinformatics 07-09-2008, 02:09 PM
Replies: 65
Views: 35,578
Posted By wesb
CLC Bio Workbench Trial

I got a trial copy of CLC Bio Workbench. They only let you use their trial data sets. You can't upload your own. Its pretty efficient. It mapped 5 million paired-end solexa reads on my Mac book...
Forum: Introductions 07-09-2008, 01:00 PM
Replies: 0
Views: 2,952
Posted By wesb
Introduction - Bioinformatics Graduate Student

I'm a graduate student in Bioinformatics at Boston University. I'm with the graduate partnership with NIH so I'm doing my thesis at the National Cancer Institute. I'm working on miRNA profiling in...
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