Forum: Bioinformatics
09-04-2015, 12:48 PM
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Replies: 1
Views: 789
Sorting VCFs from INFO field
VCFs have an INFO column that contains many sub-categories, depending on the annotations available at the time of calling. Is there a method of sorting VCFs using the sub field info? This would seem...
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Forum: Bioinformatics
08-14-2014, 03:24 PM
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Replies: 2
Views: 1,414
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Forum: Bioinformatics
08-14-2014, 02:26 PM
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Replies: 2
Views: 1,414
RNAseq .wig files
Hello all! I need to analyze some RNAseq data in .wig (wiggle) format, that I obtained from a paper, but I am unfamiliar with this format. I want to filter for a certian set of genes (ovary related)...
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Forum: Site Announcements
06-27-2014, 07:09 AM
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Replies: 4
Views: 60,537
Thank you
Ah I was wondering what was going on with the site! Glad it's not just me! I wanted to take this opportunity to THANK YOU for running the forum it has been a great help to me over the years. There...
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Forum: Bioinformatics
07-06-2011, 10:28 AM
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Replies: 13
Views: 6,366
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Forum: Bioinformatics
07-05-2011, 03:00 PM
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Replies: 13
Views: 6,366
Variance Estimation
I have been using DESeq to analyze gene expression from SAGE samples. To decide how to compare samples we have been using ECDF (empirical cumulative data function) plots to determine the quality of...
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Forum: Bioinformatics
06-10-2011, 11:27 AM
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Replies: 3
Views: 3,982
Thanks For the quick reply Mr. Black
Ok, I...
Thanks For the quick reply Mr. Black
Ok, I understand that the data can be sorted manually in excel, but I don't see what corelation is among the genes that are marked as differential expressed. I...
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Forum: Bioinformatics
06-10-2011, 08:49 AM
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Replies: 3
Views: 3,982
DESeq DiffExpress Vs. Fold Change
I don't understand the logic behind the data set DESeq provides when I perform the differential expression command. All of the numbers in the columns are in random order, there is not one column that...
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Forum: Introductions
06-10-2011, 08:40 AM
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Replies: 3
Views: 1,604
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Forum: Introductions
06-09-2011, 08:17 AM
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Replies: 3
Views: 1,604
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Forum: Bioinformatics
06-03-2011, 11:41 AM
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Replies: 39
Views: 20,607
Viewing processed data
Great program for processing data. I used it to find fold change and which genes had the greatest fold change between groups. I want to know if its possible to sort the data according to fold change...
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