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Forum: Bioinformatics 05-14-2010, 08:37 AM
Replies: 19
Views: 11,345
Posted By sundar
Unhappy need to view the extract conig file

Hi all, i can extract the best contig file by using a perl program .but i wanna view the extracted contig file.


Need help
Forum: Bioinformatics 05-14-2010, 12:47 AM
Replies: 19
Views: 11,345
Posted By sundar
Hi torst, I am...

Hi torst,


I am having the doubt in denovo assembly, shall i ask?
Forum: Bioinformatics 05-14-2010, 12:39 AM
Replies: 19
Views: 11,345
Posted By sundar
Hi farhat, I wanna know ,how to...

Hi farhat,

I wanna know ,how to extract contig file ,I am running velvet algorithm , i got .afg format, that i have viewed in hawkeye .,and i wanna extract specific contig .can you help...
Forum: Illumina/Solexa 05-13-2010, 07:03 AM
Replies: 0
Views: 1,658
Posted By sundar
Problem in extract contig

I am having the assemble file .. Which means i got the result from velvet .afg, while i view in amos ,it viewing properly. But i tried in extract contig .,it showing the error. Can any one suggest...
Forum: De novo discovery 05-12-2010, 11:05 PM
Replies: 4
Views: 4,712
Posted By sundar
Can you tell me the "Special...

Can you tell me the "Special viewer"???????
Forum: De novo discovery 05-12-2010, 05:33 AM
Replies: 4
Views: 4,712
Posted By sundar
hmmm ... your right..... But while i done with...

hmmm ... your right..... But while i done with "velvet" denovo assembly .. I have got the .afg file ,so that i can easily shows the assembly files in the viewer (GUI) format. Like wise in abyss,edena...
Forum: De novo discovery 05-11-2010, 10:31 PM
Replies: 4
Views: 4,712
Posted By sundar
Need help on soap denovo

Hi all, :confused:

Currently i'm running soapdenovo . i am getting two output files one is (1).contig , and the second one is...
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