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Forum: Bioinformatics 03-04-2015, 02:24 PM
Replies: 10
Views: 30,023
Posted By rahulvrane
Technically you dont need to go that far. Since...

Technically you dont need to go that far. Since blastn/blastp scores for latest blast+ packages is already sorted with top hit as the first hit, you can just use the following.

blastn -query...
Forum: The Pipeline 10-23-2013, 08:55 AM
Replies: 80
Views: 197,156
Posted By rahulvrane
Thanks a lot for that GW_OK! :) I guess the...

Thanks a lot for that GW_OK! :)

I guess the only way the minions are winning is if they can extend the lifespan of the flowcells.
Forum: The Pipeline 10-23-2013, 06:56 AM
Replies: 80
Views: 197,156
Posted By rahulvrane
Maybe I am a bit new to the whole ONT...

Maybe I am a bit new to the whole ONT discussion.. But from my read of the website, I see they talk about a 'Run till you get sufficient data' workflow. (Kinda enticing :D )

But has there been any...
Forum: Bioinformatics 10-13-2012, 03:09 AM
Replies: 1
Views: 1,679
Posted By rahulvrane
Popoolation2 mpileup2sync error

Hello,

I have been trying to convert a mpileup format file to a sync file for usage in the population genetics program Popoolation2. However whenever I attempt this, I get an error saying:

...
Forum: Bioinformatics 10-12-2012, 08:16 PM
Replies: 0
Views: 1,264
Posted By rahulvrane
Exclamation How to view plink *.ld output

Hello,
I am a newbie in this avenue and I have just managed to generate some population sequencing data. I have generated the vcf files using Unified Genotyper (GATK) and then converted the vcf into...
Forum: Introductions 10-02-2012, 08:26 AM
Replies: 1
Views: 551
Posted By rahulvrane
Sequencing one's way up from Down Under!

Hello!

I am a Genetics Undergraduate Honours student @ University of Melbourne working on sequencing projects for high density linkage analysis and phase genome assembly. I am attempting...
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