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Search: Posts Made By: kdarbs
Forum: Bioinformatics 03-23-2015, 06:39 PM
Replies: 4
Views: 1,752
Posted By kdarbs
Thank you. I'll try those versions of Meraculous...

Thank you. I'll try those versions of Meraculous and Boost.
Forum: Bioinformatics 03-21-2015, 12:43 AM
Replies: 4
Views: 1,752
Posted By kdarbs
Am using boost 1.57.0. What is v.4.0.4.1?

Am using boost 1.57.0. What is v.4.0.4.1?
Forum: Bioinformatics 03-20-2015, 07:47 AM
Replies: 4
Views: 1,752
Posted By kdarbs
Install Meraculous

Can someone help me with steps on how to install meraculous genome assembler? I used their manual but I keep having this error "undefined reference to pthreads...".
Forum: Bioinformatics 10-10-2013, 06:02 AM
Replies: 2
Views: 2,315
Posted By kdarbs
Thank you!

Thank you!
Forum: Bioinformatics 10-09-2013, 10:40 PM
Replies: 2
Views: 2,315
Posted By kdarbs
How k-mers are merged to form contigs

I have a perl code that generates all k-mers of a sequence. Now, am trying to get contigs using these k-mers.

Does anybody have an idea how contigs are generated from k-mers in perl or any other...
Forum: Bioinformatics 09-26-2013, 06:11 PM
Replies: 2
Views: 1,943
Posted By kdarbs
Thank you!

Thank you!
Forum: Bioinformatics 09-26-2013, 04:32 PM
Replies: 2
Views: 1,943
Posted By kdarbs
How are K-mers used to form contigs in de novo assembly?

Hi,

I would like to know how the k-mers used to draw de bruijn graphs are assembled to form contigs.

Any ideas???

Thank you.
Forum: Bioinformatics 09-16-2013, 09:16 PM
Replies: 0
Views: 1,918
Posted By kdarbs
How does ALLPATHS-LG use quality scores???

I would like to know how quality scores are used in ALLPATHS-LG assembly tool.
What is the main purpose for using the quality scores???

Thank you!
Forum: Bioinformatics 05-31-2013, 10:45 AM
Replies: 0
Views: 1,415
Posted By kdarbs
Raw genotype and SNP p-value data

I need both raw genotype and SNP p-value data for a particular case(disease) and/or control.
It should be expression data, either RNA-seq or micro array data.

Thank you,
Kdarbs.
Forum: Bioinformatics 05-24-2013, 07:17 PM
Replies: 0
Views: 1,014
Posted By kdarbs
RNA-Seq and SNP p-value data

I need both RNA-Seq and SNP p-value data for case(disease) and/or control.

I searched the web but I found data for each in different studies but I did not find a study that has both RNA-Seq and...
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