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Forum: Bioinformatics 10-05-2018, 06:13 AM
Replies: 1
Views: 1,700
Posted By DCseq
Script to make sequences equal length

Hi!
I would like to perform a motif analysis with my ChIP-Seq data on meme-suite.
The program requires me to put in sequences of equal length.
I have the nucleotide sequences from the regions...
Forum: Bioinformatics 08-10-2017, 05:41 AM
Replies: 1
Views: 1,174
Posted By DCseq
MA plot

Hi there!
I would like to make the following plot from NGS data. ...
Forum: Bioinformatics 07-14-2017, 01:53 AM
Replies: 0
Views: 698
Posted By DCseq
Pathway analysis and expression counts

Hi there!

I am analysing some transcriptomics data with the iPathwayGuide tool on advaitabio.com.
Turns our that a large number of differentially regulated genes in pathways that come up as...
Forum: Bioinformatics 07-14-2017, 01:44 AM
Replies: 5
Views: 2,383
Posted By DCseq
Great, many thanks for your responses. I...

Great, many thanks for your responses. I requested the GTF files from our collaborator and will let you know how everything goes!
Forum: Bioinformatics 07-13-2017, 12:44 AM
Replies: 5
Views: 2,383
Posted By DCseq
I asked them for DESeq2 files but they replied...

I asked them for DESeq2 files but they replied they cannot give me such an output quoting the following:
"
************************************
Export of tables

Tables can be exported in four...
Forum: Bioinformatics 07-12-2017, 07:11 AM
Replies: 5
Views: 2,383
Posted By DCseq
Volcano plot with R

Hello everyone!

We are cooperating with an Institute that performed Illumina sequencing (HiSeq3000) for our RNA samples. They normalized and annotated the data using CLC Genomics Workbench 9. In...
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