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Forum: Bioinformatics 08-02-2018, 05:42 AM
Replies: 0
Views: 635
Posted By sc_123
Failed connection with Ensembl VEP script on port 3337

I'm using the VEP (Variant Effect Predictor) standalone Perl script to annotate some variants, it connects to the Ensembl MySql database. I used the same script before and I didn't have any problems....
Forum: Bioinformatics 04-09-2018, 02:25 AM
Replies: 0
Views: 1,237
Posted By sc_123
some variants disappear after bcftools norm


I noticed that when performing left-normalization on my vcf file (as suggested by Annovar at, the number of variants is...
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