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Search: Posts Made By: brojee
Forum: Bioinformatics 07-07-2019, 08:04 AM
Replies: 3
Views: 10,108
Posted By brojee
GI records are basically easy to make, in the...

GI records are basically easy to make, in the event that you have involvement with slam, perl, or any programming language that you can use to design content, you might most likely naturally pull the...
Forum: Bioinformatics 07-07-2019, 07:58 AM
Replies: 3
Views: 2,782
Posted By brojee
As I run impact in results, those hit with even...

As I run impact in results, those hit with even 1% inclusion of question is incorporated, how I can confine the outcomes to at any rate 60% inquiry inclusion with rate character 80.
Forum: Bioinformatics 07-07-2019, 07:53 AM
Replies: 6
Views: 4,817
Posted By brojee
You can download the uniprot fasta successions...

You can download the uniprot fasta successions from: http://www.uniprot.org/downloads

You should organization and make impact lists before you can utilize uniprot to impact against. You can...
Forum: Bioinformatics 07-07-2019, 07:45 AM
Replies: 27
Views: 43,246
Posted By brojee
On the off chance that you need groupings...

On the off chance that you need groupings separated from a multi-FASTA and are available to utilizing a prior instrument, I would likewise recommend either the faSomeRecords or faOneRecord direction...
Forum: Bioinformatics 07-07-2019, 07:39 AM
Replies: 9
Views: 15,789
Posted By brojee
on the off chance that they are requested that...

on the off chance that they are requested that way, at that point you know where in the record they are,

simply proceed to get them from the order line

possibly breakdown the grouping onto a...
Forum: Bioinformatics 07-07-2019, 07:33 AM
Replies: 10
Views: 10,773
Posted By brojee
Possibly you might want to utilize the _sorted...

Possibly you might want to utilize the _sorted document from the Illumina pipeline:

the desciption of the _sorted document from CASAVA 1.7 manual p. 73:

This yield document is like...
Forum: Bioinformatics 07-07-2019, 07:24 AM
Replies: 10
Views: 10,773
Posted By brojee
Possibly you might want to utilize the _sorted...

Possibly you might want to utilize the _sorted document from the Illumina pipeline:

the desciption of the _sorted document from CASAVA 1.7 manual p. 73:

This yield document is like...
Forum: Bioinformatics 07-07-2019, 07:18 AM
Replies: 3
Views: 3,436
Posted By brojee
First locate the quantity of peruses that guide...

First locate the quantity of peruses that guide at any rate once. To do this, run necktie with "- k 1" alternative. Lets call this number K1.

At that point run necktie with the "- k 2" choice....
Forum: Bioinformatics 07-07-2019, 07:07 AM
Replies: 6
Views: 5,281
Posted By brojee
No stresses, however the technique I recommended...

No stresses, however the technique I recommended is somewhat of a hack... It will expect you to tinker with the information a bit.

Initially, do you have to save the perused quality data? In the...
Forum: Bioinformatics 07-07-2019, 06:45 AM
Replies: 2
Views: 1,367
Posted By brojee
Hello there, In the event that you are going...

Hello there,

In the event that you are going to utilize the new form of CASAVA (v.1.8) you may need to expel the peruses that would be typically sifted through before you do the arrangements. See...
Forum: Bioinformatics 07-07-2019, 06:27 AM
Replies: 6
Views: 4,290
Posted By brojee
Did you run the configureAlignment order while...

Did you run the configureAlignment order while you were in this catalog "/mnt/eql2/liutao/trans/yield/Unaligned/"? Is there a SampleSheet.mk document in that index?
Forum: Bioinformatics 07-07-2019, 06:16 AM
Replies: 8
Views: 8,628
Posted By brojee
Machine gear-piece, Is it true that you are...

Machine gear-piece,

Is it true that you are indicating MID data when you set up the mapping venture? On the off chance that the sff records have just been part by MID tag, at that point you ought...
Forum: Bioinformatics 07-07-2019, 06:03 AM
Replies: 31
Views: 7,600
Posted By brojee
I think I've made sense of what the issue was... ...

I think I've made sense of what the issue was...

I have utilized a UCSC mm9 reference gathering against an EMSEMBL GTF, and that clearly was the issue. A few traits of the two obviously doesn't...
Forum: Bioinformatics 07-07-2019, 05:40 AM
Replies: 3
Views: 3,943
Posted By brojee
Sleeve fasteners will utilize the mapped peruses...

Sleeve fasteners will utilize the mapped peruses and the reference genome to make a closefisted get together (a base spreading over tree-esque structure) that clarifies the peruses. The rationale of...
Forum: Bioinformatics 07-07-2019, 05:30 AM
Replies: 9
Views: 8,279
Posted By brojee
Just observed your post and thought I'd give you...

Just observed your post and thought I'd give you an expression of alert. Ensure you investigate your comment intently. We just began to play around with the iGenomes stuff, yet I'll disclose to you...
Forum: Bioinformatics 07-07-2019, 05:25 AM
Replies: 3
Views: 2,018
Posted By brojee
Over the span of looking at RNA-seq information...

Over the span of looking at RNA-seq information and performing RNA-seq information examination, an issue I've kept running into (utilizing the "tuxedo" programming/pipeline of tophat->cufflinks) is...
Forum: Bioinformatics 07-07-2019, 05:20 AM
Replies: 7
Views: 2,623
Posted By brojee
On the off chance that you need to, use...

On the off chance that you need to, use subprocess bundle. It should work fine.

I think shell content is direct, and ought to be utilized, if everything it does is to run a basic order. In any...
Forum: Bioinformatics 07-07-2019, 05:14 AM
Replies: 4
Views: 1,587
Posted By brojee
I think you are have forgot to put a comma after...

I think you are have forgot to put a comma after cfg.project. Put the same and see of it work. If not, do let me know. I would be more than happy to help you out.

Thanks.
Forum: Bioinformatics 07-07-2019, 05:09 AM
Replies: 5
Views: 1,504
Posted By brojee
This is something that I have been looking for so...

This is something that I have been looking for so long. Thanks for asking it here on this forum. I got my answer as well.
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