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Forum: Bioinformatics 05-06-2020, 01:00 PM
Replies: 1
Views: 1,528
Posted By aby
GTEx PLINK format

Can anyone tell me that how are the PILOT data in GTEx format arranged. I mean PLINK states that for each row in .MAP file there are 2 columns for genotype information in .PED file. However, for GTEx...
Forum: Bioinformatics 05-06-2020, 12:54 PM
Replies: 0
Views: 590
Posted By aby
Exclamation GTEx PLINK FILES

Can anyone tell me that how are the PILOT data in GTEx format arranged. I mean PLINK states that for each row in .MAP file there are 2 columns for genotype information in .PED file. However, for GTEx...
Forum: Introductions 05-06-2020, 12:49 PM
Replies: 1
Views: 912
Posted By aby
Exclamation GTEx PLINK format

Can anyone tell me that how are the PILOT data in GTEx format arranged. I mean PLINK states that for each row in .MAP file there are 2 columns for genotype information in .PED file. However, for GTEx...
Forum: Bioinformatics 05-23-2019, 11:47 AM
Replies: 3
Views: 3,034
Posted By aby
vdb-decrypt.2.9.0 err: size insufficient while...

vdb-decrypt.2.9.0 err: size insufficient while validating file within file system module - cannot use filesize of zero when checking if cached file is complete
Forum: Bioinformatics 05-23-2019, 08:13 AM
Replies: 3
Views: 3,034
Posted By aby
Thumbs down I get this error while decrypting by VDB-DECRYPT

err: size "insufficient" while validating file size in file system module
Forum: Bioinformatics 08-02-2014, 08:14 AM
Replies: 5
Views: 1,550
Posted By aby
You might want to use R time series ARIMAX...

You might want to use R time series ARIMAX modeling to see time series relation between two series and then model.
Forum: Academic/Non-Profit Jobs 08-01-2014, 10:22 PM
Replies: 2
Views: 2,436
Posted By aby
Sent. My webportal is <commercial link removed>. ...

Sent. My webportal is <commercial link removed>.

Abhishek
Forum: Academic/Non-Profit Jobs 08-01-2014, 10:17 PM
Replies: 1
Views: 944
Posted By aby
Mailed you my CV. Details about me at my...

Mailed you my CV. Details about me at my webportal www.abi-o-tech.com .

Abhishek
Forum: Academic/Non-Profit Jobs 08-01-2014, 10:13 PM
Replies: 1
Views: 1,228
Posted By aby
Okay. I am interested. Details about me at my...

Okay. I am interested. Details about me at my homepage www.abi-o-tech.com . Email me at aby.narain@gmail.com for a detailed CV.

Abhishek
Forum: Bioinformatics 08-01-2014, 09:52 PM
Replies: 5
Views: 1,550
Posted By aby
What organism are you using ? What pathway ?

What organism are you using ? What pathway ?
Forum: Service Providers 07-21-2014, 12:10 PM
Replies: 14
Views: 13,362
Posted By aby
Try www.abi-o-tech.com .

Try www.abi-o-tech.com .
Forum: Bioinformatics 09-09-2010, 07:37 AM
Replies: 292
Views: 159,961
Posted By aby
Okay, I have solved my problems. Seems there is a...

Okay, I have solved my problems. Seems there is a script to add the header file, and different command options for conversion to Bam.
Forum: Bioinformatics 09-07-2010, 10:57 AM
Replies: 292
Views: 159,961
Posted By aby
sam to bam conversion not taking place

samtools import example.sam example.bam

This command does not work. Gives error:

Usage: bamtk import <in.ref_list> <in.sam> <out.bam>


What to do? What is in.ref_list ?
Forum: Bioinformatics 09-03-2010, 03:46 PM
Replies: 292
Views: 159,961
Posted By aby
I converted the all.map file generated from MAQ...

I converted the all.map file generated from MAQ tool to SAM format using maq2sam-long in samtools. The output file I named as Out. Now when I try to convert Out file (which is in SAM format) to BAM...
Forum: Bioinformatics 09-03-2010, 03:09 PM
Replies: 292
Views: 159,961
Posted By aby
I was trying to convert my single read illumina...

I was trying to convert my single read illumina file to SAM format using the export2sam.pl script. It does not work and gives the following error:

Use of uninitialized value $t[21] in string ne at...
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