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adapter alignment annotation annovar assembly atac-seq bam bbmap bbtools bioanalyzer bioconductor bioinfomatics bioinformactics bioinformatics blast bowtie bwa chip-seq cluster density covaris coverage cuffcompare cuffdiff cufflinks cuffmerge cummerbund cutadapt deseq deseq2 differential expression edger error fastq fastqc fpkm gatk genome htseq-count illumina install ion torrent mapping metagenomics mirna miseq newbler nextera nextseq ngs ngs data analysis normalization pacbio quality rna-seq rnaseq samtools sanger/illumina 1.9 segmentation fault sequencing snp star tophat tophat2 truseq ucsc varscan vcf vcftools velvet workshop

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