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Forum: Bioinformatics 06-07-2017, 12:39 PM
Replies: 0
Views: 982
Posted By tnabtaf
Post Galaxy Project New Releases and News

A lot has been happening in the the Galaxy Project (https://galaxyproject.org/) lately. The June News of the Galaxy (https://galaxyproject.org/galaxy-updates/2017-06/#releases) has details on:


...
Forum: Events / Conferences 10-07-2014, 09:02 AM
Replies: 0
Views: 1,472
Posted By tnabtaf
Call for Abstracts: Computer Demo Sessions at Plant and Animal Genome, Jan 2015

Plant and Animal Genome XXIII (PAGXXIII)
January 10-14, 2015
San Diego, California, United States
http://intlpag.org/

PAGXXIII will bring together over 2,800 leading researchers in plant and...
Forum: Bioinformatics 07-10-2014, 08:22 PM
Replies: 2
Views: 2,449
Posted By tnabtaf
A better place to post this question is...

A better place to post this question is https://biostar.usegalaxy.org/

You can also search for answers at http://galaxyproject.org/search/usegalaxy/

What you have is known as a custom build in...
Forum: Events / Conferences 05-20-2014, 01:45 PM
Replies: 0
Views: 1,158
Posted By tnabtaf
Galaxy Community Conference Early reg deadline is May 23

Hello all,

This is a reminder that the early registration deadline for the 2014 Galaxy Community Conference (GCC2014) is May 23, this Friday. Registering early assures you a seat and saves up to...
Forum: Events / Conferences 04-17-2014, 02:08 PM
Replies: 0
Views: 1,944
Posted By tnabtaf
Galaxy Community Confrerence: Poster Deadline April 25

2014 Galaxy Community Conference (GCC2014)
http://galaxyproject.org/GCC2014
June 30 - July 2, 2014
Homewood Campus
Johns Hopkins University
Baltimore, Maryland, United...
Forum: Academic/Non-Profit Jobs 03-15-2013, 12:41 PM
Replies: 0
Views: 2,180
Posted By tnabtaf
Postdoctoral Scholars, Galaxy Project, Emory University and Penn State University

We are recruiting postdoctoral scholars with expertise in Bioinformatics and Computational Biology. Our work on Galaxy (http://galaxyproject.org) is driven by our biological and biomedical research...
Forum: Events / Conferences 03-13-2013, 01:06 PM
Replies: 0
Views: 1,810
Posted By tnabtaf
2013 Galaxy Community Conference (GCC2013), 30 June - 2 July, Oslo

We are pleased to announce that early registration (http://wiki.galaxyproject.org/Events/GCC2013/Register) and paper and poster abstract submission...
Forum: Academic/Non-Profit Jobs 01-28-2013, 04:59 PM
Replies: 0
Views: 1,676
Posted By tnabtaf
Software Engineers on the Galaxy Project

http://wiki.galaxyproject.org/GalaxyIsHiring?action=AttachFile&do=get&target=GalaxyIsHiringWordCloud2.png (http://wiki.galaxyproject.org/GalaxyIsHiring)


Work on a rapidly growing open source...
Forum: Academic/Non-Profit Jobs 08-03-2012, 04:18 PM
Replies: 0
Views: 1,291
Posted By tnabtaf
Galaxy Project is looking for Postdocs

Want to work on one of the fastest growing open source bioinformatics projects around? The Galaxy Project (http://galaxyproject.org/), a highly successful high throughput data analysis platform for...
Forum: Events / Conferences 05-14-2012, 02:17 PM
Replies: 1
Views: 2,225
Posted By tnabtaf
Some updates since the initial announcement: ...

Some updates since the initial announcement:

1) A day of tutorials has been added to the agenda this year. The GCC2012 Training Day has 3 parallel tracks, each featuring four, 90 minute workshops...
Forum: Events / Conferences 03-20-2012, 02:34 PM
Replies: 1
Views: 2,225
Posted By tnabtaf
Arrow 2012 Galaxy Community Conference (GCC2012), July 25-27, Chicago

http://wiki.g2.bx.psu.edu/Events/GCC2012?action=AttachFile&do=get&target=GCC2012LogoWide400.png

We are pleased to announce that early registration...
Forum: RNA Sequencing 03-08-2012, 03:49 PM
Replies: 2
Views: 1,905
Posted By tnabtaf
The free tier on Amazon is unlikely to be enough...

The free tier on Amazon is unlikely to be enough for some RNA-Seq analysis.

Current Galaxy Project guidelines on this are at:

http://wiki.g2.bx.psu.edu/Admin/Cloud/CapacityPlanning
...
Forum: Academic/Non-Profit Jobs 03-05-2012, 02:15 PM
Replies: 0
Views: 1,496
Posted By tnabtaf
Galaxy Project Post-Docs and Software Engineers

Want to work on a rapidly growing open source bioinformatics project? The Galaxy Project (http://galaxyproject.org) is a highly successful high throughput data analysis platform for Life Sciences,...
Forum: Bioinformatics 02-24-2012, 11:09 AM
Replies: 1
Views: 1,508
Posted By tnabtaf
This question is better asked on the Galaxy-User...

This question is better asked on the Galaxy-User mailing list. See http://wiki.g2.bx.psu.edu/Mailing%20Lists.

I'm guessing that you want to intersect based on position (Tools -> Operate on...
Forum: Bioinformatics 02-21-2012, 12:35 PM
Replies: 1
Views: 2,658
Posted By tnabtaf
Jerzy, Try History -> Options -> Export to...

Jerzy,

Try History -> Options -> Export to File for the history you want to get. This will create a tar.gz archive of all the datasets (and some metadata).
Forum: Bioinformatics 02-13-2012, 09:26 AM
Replies: 6
Views: 4,795
Posted By tnabtaf
Wintec, I don't have an objective opinion...

Wintec,

I don't have an objective opinion here, but I'll post some thoughts anyway.

First, are you thinking of installing your own Galaxy, or of using the Galaxy Project public server ("main"...
Forum: Bioinformatics 02-10-2012, 10:09 AM
Replies: 2
Views: 2,011
Posted By tnabtaf
Hi Lisa, The best way to get answers about...

Hi Lisa,

The best way to get answers about Galaxy deployments is to post to the Galaxy-dev list (see http://wiki.g2.bx.psu.edu/Mailing%20Lists). That way about 600 people with some knowledge of...
Forum: Bioinformatics 01-24-2012, 12:56 PM
Replies: 2
Views: 1,942
Posted By tnabtaf
The Galaxy web search...

The Galaxy web search (http://galaxyproject.or/search/web/) did not turn up anything specific to this error. See http://wiki.g2.bx.psu.edu/Support#Error_from_tools for what to try to resolve this.
Forum: Bioinformatics 01-23-2012, 01:16 PM
Replies: 6
Views: 2,992
Posted By tnabtaf
Would GBrowse_syn...

Would GBrowse_syn (http://gmod.org/wiki/GBrowse_syn) work for you?
Forum: Bioinformatics 12-22-2011, 09:03 AM
Replies: 2
Views: 2,508
Posted By tnabtaf
I used the new "USeGalaxy" custom search...

I used the new "USeGalaxy" custom search (http://galaxyproject.org/search/usegalaxy/) and, um, didn't find anything either.

Try reposting the question to the Galaxy-User mailing list. You can...
Forum: Bioinformatics 12-20-2011, 04:12 PM
Replies: 3
Views: 3,517
Posted By tnabtaf
My guess is that Galaxy is not recognizing it as...

My guess is that Galaxy is not recognizing it as a BAM file (in which case change the datatype), or it is not sorted, in which case try sorting it. I think. :-)

Could also post to galaxy-user...
Forum: Bioinformatics 12-19-2011, 11:13 AM
Replies: 2
Views: 1,973
Posted By tnabtaf
Eric, A quick search of the Galaxy mailing...

Eric,

A quick search of the Galaxy mailing list archives (http://galaxy-users-list-archive.2308625.n4.nabble.com/) did not yield an answer for me.

Try posting the question to the galaxy-user...
Forum: Events / Conferences 12-14-2011, 03:09 PM
Replies: 1
Views: 2,382
Posted By tnabtaf
Just a reminder that applications for this...

Just a reminder that applications for this workshop close on December 15, tomorrow.

http://evomics.org/registration-form/galaxy-developer-workshop/
Forum: Bioinformatics 12-08-2011, 12:57 PM
Replies: 1
Views: 2,160
Posted By tnabtaf
Eric, A quick search of the Galaxy mailing...

Eric,

A quick search of the Galaxy mailing list archives (http://galaxy-users-list-archive.2308625.n4.nabble.com/) did not yield an answer for me.

Try posting the question to the galaxy-user...
Forum: Bioinformatics 10-20-2011, 05:53 PM
Replies: 1
Views: 1,765
Posted By tnabtaf
Try posting to either the Galaxy-user...

Try posting to either the Galaxy-user (http://wiki.g2.bx.psu.edu/Mailing%20Lists) or SAMtools help (https://lists.sourceforge.net/lists/listinfo/samtools-help) mailing lists, depending on what your...
Showing results 1 to 25 of 53

 


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