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Search: Posts Made By: KseniaA
Forum: Bioinformatics 06-30-2017, 01:30 AM
Replies: 281
Views: 62,282
Posted By KseniaA
Thank you GenoMax, This really helped! ...

Thank you GenoMax,

This really helped!

Ksenia
Forum: Bioinformatics 06-27-2017, 11:08 PM
Replies: 281
Views: 62,282
Posted By KseniaA
Thank you Brian for swift reply! Yes, you...

Thank you Brian for swift reply!

Yes, you are right, I used reads files separated, not interleaved. Here is my SRA download command:

/sratoolkit.2.8.2-1-ubuntu64/bin/fastq-dump --gzip...
Forum: Bioinformatics 06-27-2017, 06:30 AM
Replies: 281
Views: 62,282
Posted By KseniaA
Hi Brian, I am trying to QC sequencing...

Hi Brian,

I am trying to QC sequencing library downloaded from SRA, so I do not know sequencing machine was used. It seems that BBDuk is struggling with recognition of paired reads in it and stop...
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