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Search: Posts Made By: fh_fingolfin
Forum: Bioinformatics 09-16-2015, 04:09 AM
Replies: 7
Views: 1,860
Posted By fh_fingolfin
Yeah seems cBioPortal only allows downloading a...

Yeah seems cBioPortal only allows downloading a single cancer type and also only mutations for a subset of genes.

I'd need a global file just to avoid the hassle of searching for each cancer type,...
Forum: Bioinformatics 06-25-2015, 12:57 AM
Replies: 7
Views: 1,860
Posted By fh_fingolfin
Thanks for the feedback. So it seems the whole...

Thanks for the feedback. So it seems the whole TCGA project is quite a mess regarding data-presentation which is a pity. The COSMIC portal in contrast is neatly organized I find. I wonder why can't...
Forum: Bioinformatics 06-23-2015, 04:00 AM
Replies: 7
Views: 1,860
Posted By fh_fingolfin
Bump - anyone?

Bump - anyone?
Forum: Bioinformatics 06-12-2015, 12:13 AM
Replies: 7
Views: 1,860
Posted By fh_fingolfin
Question Entire TCGA mutation collection

Hi all,

I'm a bit lost with TCGA. We are trying to make a global analysis of mutations in genes in cancers categorized per tissue type / cancer type. We thought about utilizing the TCGA data for...
Forum: Bioinformatics 07-15-2014, 04:29 AM
Replies: 6
Views: 2,849
Posted By fh_fingolfin
Question EdgeR: Contrasts for both within and between subject comparison

I have two sets of samples, one set being sensitive to a compound treatment, the other resistant. For each group I have patient samples that were left untreated, treated 2h with a compound and 24h...
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