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Forum: Bioinformatics 12-11-2009, 01:22 AM
Replies: 236
Views: 586,930
Posted By dan
I'm guessing we need some kind of wiki forum ......

I'm guessing we need some kind of wiki forum ... but I not sure what form... um?

I think the problem is that the wiki is so bad for threaded conversations, we need a place to discuss the wiki...
...
Forum: Bioinformatics 11-19-2009, 07:57 AM
Replies: 236
Views: 586,930
Posted By dan
Just click here: ...

Just click here:

http://seqanswers.com/wiki/Special:BrowseData/Bioinformatics%20application?Biological_domain=Structural_variants


;-)
Forum: Bioinformatics 11-13-2009, 03:00 AM
Replies: 236
Views: 586,930
Posted By dan
I know the feeling! I'm going to start a...

I know the feeling!

I'm going to start a 'standard operating procedures' (SOP) section on the wiki to document case studies based on various requirements.

Basically the answer to your question...
Forum: Bioinformatics 11-12-2009, 01:12 AM
Replies: 236
Views: 586,930
Posted By dan
Here is is finally! The result is pretty...

Here is is finally!

The result is pretty awesome! Thanks everyone for taking part!

(I'll break this down to remove 'robot' edits, which is the reason why I currently have so many)


SELECT...
Forum: Bioinformatics 11-11-2009, 02:27 PM
Replies: 236
Views: 586,930
Posted By dan
Hey Oliver, I've been working developing the...

Hey Oliver,

I've been working developing the 'wiki arm' of the SEQempire (called SEQwiki) so that it can be used as a browsable / query-able archive of "Software packages for next gen sequence...
Forum: Bioinformatics 10-27-2009, 06:28 AM
Replies: 236
Views: 586,930
Posted By dan
I'd map against the genome (you never know) using...

I'd map against the genome (you never know) using bowtie or SOAP.

You can look them up here:

http://seqanswers.com/wiki/Software
Forum: Bioinformatics 08-18-2009, 03:19 PM
Replies: 236
Views: 586,930
Posted By dan
Beta version of the SEQwiki software database up and running...

Check it out...

http://seqanswers.com/wiki/SEQanswers
http://seqanswers.com/wiki/Software


Dan.
Forum: Bioinformatics 07-22-2009, 09:55 AM
Replies: 236
Views: 586,930
Posted By dan
Right... these are two important issues. Simple...

Right... these are two important issues. Simple answer, yes, it is technically easy to allow multiple tags. Complex answer, how do we actually want to model the software? i.e. what tables, fields and...
Forum: Bioinformatics 07-20-2009, 03:48 AM
Replies: 236
Views: 586,930
Posted By dan
Well, I got something up and running as quickly...

Well, I got something up and running as quickly as I could here:

http://www.bioinformatics.org/wiki/Special:BrowseData/Sandbox_ngs


Note, the category (or 'class') I used for the pages is...
Forum: Bioinformatics 07-20-2009, 01:20 AM
Replies: 236
Views: 586,930
Posted By dan
Hi ECO, I've been thinking about this a lot...

Hi ECO,

I've been thinking about this a lot since it got suggested. One of the things that worries me is the proliferation of sites and locations where such a list should (or could) be...
Forum: Bioinformatics 06-16-2009, 01:20 AM
Replies: 236
Views: 586,930
Posted By dan
I've been using SMW quite a bit - I can probably...

I've been using SMW quite a bit - I can probably get something 'beta' quikly going under 'ngs.referata.com' (or where ever). Then we can start to develop in the wiki style.

Hopefully Wikipedia...
Forum: Bioinformatics 06-15-2009, 10:32 PM
Replies: 236
Views: 586,930
Posted By dan
Sounds like a job for Semantic MediaWiki - We can...

Sounds like a job for Semantic MediaWiki - We can register a free SMW site at referata.com and start playing around with ideas.

SMW is basically a wiki database system.
Forum: Bioinformatics 06-15-2009, 02:36 AM
Replies: 236
Views: 586,930
Posted By dan
Wiki anyone? I'm sure there is a space for this...

Wiki anyone? I'm sure there is a space for this kind of list on Wikipedia (which, incidentally, doesn't even have an article dedicated to NGS) or we could use one of the existing sci-wikis out there...
Forum: Bioinformatics 05-09-2009, 03:11 AM
Replies: 236
Views: 586,930
Posted By dan
Smile The Bioconductor 'chipseq' package / programs...

The Bioconductor 'chipseq' package / programs should be added for sure! See also the other thread on this topic:

http://seqanswers.com/forums/showthread.php?t=742
Forum: Bioinformatics 12-04-2008, 01:44 AM
Replies: 236
Views: 586,930
Posted By dan
Put the info in this thread into a wiki?

Hi,

Can we put the info in this thread into a Wiki page to allow better structuring of the data?

Its a bit of a monster thread, and it isn't clear where in the thread important info will come...
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