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Search: Posts Made By: Emily_Ensembl
Forum: Bioinformatics 03-12-2019, 12:43 AM
Replies: 7
Views: 1,096
Posted By Emily_Ensembl
No, you would need to parse your query response...

No, you would need to parse your query response to limit the data in that way.
Forum: Bioinformatics 03-08-2019, 07:17 AM
Replies: 7
Views: 1,096
Posted By Emily_Ensembl
Try adding pops=1 to the URL, like: wget -q...

Try adding pops=1 to the URL, like:

wget -q --header='Content-type:application/json' --header='Accept:application/json' --post-data='{ "ids" : ["rs56116432" ] }'...
Forum: Bioinformatics 03-08-2019, 06:08 AM
Replies: 7
Views: 1,096
Posted By Emily_Ensembl
pops=1 should get you all 26 populations

pops=1 should get you all 26 populations
Forum: Bioinformatics 03-07-2019, 12:04 AM
Replies: 7
Views: 1,096
Posted By Emily_Ensembl
You could try the Ensembl REST API variation POST...

You could try the Ensembl REST API variation POST endpoint (http://rest.ensembl.org/documentation/info/variation_post). You'd need to chunk your list of variants into 200s but it would be relatively...
Forum: Bioinformatics 10-12-2018, 12:46 AM
Replies: 9
Views: 2,016
Posted By Emily_Ensembl
Here's the blog post:...

Here's the blog post: http://www.ensembl.info/2018/10/12/our-new-joint-transcript-initiative-the-matched-annotation-from-the-ncbi-and-ebi-mane-project/
Forum: Bioinformatics 10-09-2018, 11:55 PM
Replies: 9
Views: 2,016
Posted By Emily_Ensembl
We've got a blog post coming out about this in...

We've got a blog post coming out about this in the next few days.
Forum: Bioinformatics 04-17-2018, 04:55 AM
Replies: 9
Views: 2,016
Posted By Emily_Ensembl
We will close this at midnight (BST) on Thursday....

We will close this at midnight (BST) on Thursday. If you wish to have your say, you've got two days to do it.
Forum: Bioinformatics 04-11-2018, 12:05 AM
Replies: 9
Views: 2,016
Posted By Emily_Ensembl
This is the aim of the survey. As the clinical...

This is the aim of the survey. As the clinical community frequently request something like a primary transcript, we are looking to define if this is generally wanted by the community (or just a vocal...
Forum: Bioinformatics 08-16-2017, 04:06 AM
Replies: 7
Views: 1,821
Posted By Emily_Ensembl
We're aware of the problem with TOM1L1 and COX11...

We're aware of the problem with TOM1L1 and COX11 in Ensembl, and it is fixed in the next release, coming out next week.
Forum: Bioinformatics 10-07-2014, 06:24 AM
Replies: 2
Views: 1,383
Posted By Emily_Ensembl
Numbers that begin with 0 are transcripts that...

Numbers that begin with 0 are transcripts that have been identified by Havana manual annotation, whereas numbers that begin with 2 have only been identified by Ensembl automatic annotation. There's...
Forum: Bioinformatics 12-05-2013, 01:44 AM
Replies: 13
Views: 8,757
Posted By Emily_Ensembl
I find four of them, KCNQ1OT1_1, KCNQ1OT1_2,...

I find four of them, KCNQ1OT1_1, KCNQ1OT1_2, KCNQ1OT1_3 and KCNQ1OT1_5, all neighbours on the forward strand.
...
Forum: Bioinformatics 12-03-2013, 12:36 AM
Replies: 13
Views: 8,757
Posted By Emily_Ensembl
Hi sp44 We don't update old assemblies with...

Hi sp44

We don't update old assemblies with the new annotation, so for NCBIm37 you will only see the release 67 annotation from May 2012, as that was the last release with the old assembly.
...
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