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Search: Posts Made By: ACEnglish
Forum: Pacific Biosciences 08-09-2013, 08:15 AM
Replies: 17
Views: 11,726
Posted By ACEnglish
Singleton means a scaffold without a gap. ...

Singleton means a scaffold without a gap.
Didn't address means that no reads mapped in a way that they seem to support the gap (into/over the gap)
Didn't pass assembly means a good assembly...
Forum: Pacific Biosciences 05-29-2013, 07:40 AM
Replies: 17
Views: 11,726
Posted By ACEnglish
Correct. Inter-scaffold gap filling - pretty much...

Correct. Inter-scaffold gap filling - pretty much a scaffolder. I hope to have it finished by August at the latest.
Forum: Pacific Biosciences 05-16-2013, 12:17 PM
Replies: 17
Views: 11,726
Posted By ACEnglish
PBJelly Fix

Hello,

The way to fix this glibc 'memory leak' problem is to simply comment change one small piece of the code. When PBJelly 12.9.14 was being developed, blasr couldn't handle IUB nucleotide...
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