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Search: Posts Made By: Stroehli
Forum: Bioinformatics 02-18-2014, 05:37 AM
Replies: 8
Views: 2,455
Posted By Stroehli
Hi HTnoob, I ran into the same problem trying...

Hi HTnoob,
I ran into the same problem trying to run snp-search. I will try to find a solution for this issue. Meanwhile, if you come up with a good solution I would appreciate you posting it here....
Forum: Introductions 02-12-2014, 05:22 AM
Replies: 3
Views: 1,209
Posted By Stroehli
Both the University of Munich and the University...

Both the University of Munich and the University of Saarland are well-renowned in the German bioinformatic community. I personally haven't heard of the Bonn-Achen center, so I cannot say anything...
Forum: Bioinformatics 01-09-2014, 04:32 AM
Replies: 3
Views: 1,522
Posted By Stroehli
Scaffold_builder...

Scaffold_builder (http://www.scfbm.org/content/8/1/23) looks straight-forward and could be a good tool for that purpose. Haven't had the time to test it myself yet though.
Forum: Bioinformatics 01-23-2013, 05:30 AM
Replies: 2
Views: 2,397
Posted By Stroehli
Hi, I encountered a similar problem: I want to...

Hi,
I encountered a similar problem: I want to extract a certain region from my final .bam file and reobtain the reads from this region. I want to rerun the alignment with the read pairs mapping to...
Forum: Bioinformatics 12-13-2012, 11:57 PM
Replies: 36
Views: 18,975
Posted By Stroehli
Hi, I think you cannot run transAbyss on its...

Hi,
I think you cannot run transAbyss on its own. Taking a short look at the manual, (http://www.bcgsc.ca/downloads/trans-abyss/data/trans-abyss-manual.v1.2.0.doc.pdf) I figured you probably need to...
Forum: Bioinformatics 12-13-2012, 11:27 PM
Replies: 1
Views: 1,498
Posted By Stroehli
That might meet your needs: ...

That might meet your needs:

http://nar.oxfordjournals.org/content/early/2012/09/08/nar.gks804.full

They provide accession numbers to the raw data.
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