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Forum: RNA Sequencing

08-16-2013, 07:03 AM

Replies: 11

number of read in RNA-seq?

Views: 10,201

Posted By JahnDavik

Great. Thanks. Very useful for me.

Great. Thanks. Very useful for me.

Forum: Bioinformatics

04-18-2013, 01:30 AM

Replies: 32

Subsampling using 'head -n #"?

Views: 35,386

Posted By JahnDavik

Thanks. This is what I'd need. Hope it works :-)

Thanks. This is what I'd need. Hope it works :-)

Forum: Bioinformatics

04-18-2013, 01:27 AM

Replies: 32

Subsampling using 'head -n #"?

Views: 35,386

Posted By JahnDavik

Ad:random sampling in forward and reverse

Thanks for posting this code. I really need it and I really hope it works.

Forum: Bioinformatics

04-18-2013, 01:25 AM

Replies: 32

Subsampling using 'head -n #"?

Views: 35,386

Posted By JahnDavik

Thanks for posting this code. I really need it...

Thanks for posting this code. I really need it and I really hope it works?:)

Forum: Bioinformatics

04-17-2013, 08:22 AM

Replies: 15

random subset paired-end fastq

Views: 17,357

Posted By JahnDavik

sampling fw and rev

Another one from a biologist: Will this routing sample the pairs belonging to each other? As opposed to a random selection from each of the fw and rev files, I mean.

Forum: RNA Sequencing

04-16-2013, 02:07 AM

Replies: 11

number of read in RNA-seq?

Views: 10,201

Posted By JahnDavik

compressed files

Does it work with .gz files, or do I have to unpack them?

Forum: Bioinformatics

04-15-2013, 12:16 AM

Replies: 2

splitting big paired fastq files

Views: 3,249

Posted By JahnDavik

Thank you for your prompt reply! There are...

Thank you for your prompt reply!
There are 150-200 mill reads in each of the paired fastq files and I just expected that to be quite redundant.

Forum: Bioinformatics

04-14-2013, 11:39 PM

Replies: 2

splitting big paired fastq files

Views: 3,249

Posted By JahnDavik

splitting big paired fastq files

Hi there,
I do my 'bioinformatic' work in CLC. Now I sit with many (30) large files with paired end reads (~10GB each direction) and my computer is stalling if I'd try to use all in a de novo...

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