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Search: Posts Made By: JahnDavik
Forum: RNA Sequencing 08-16-2013, 07:03 AM
Replies: 11
Views: 10,201
Posted By JahnDavik
Great. Thanks. Very useful for me.

Great. Thanks. Very useful for me.
Forum: Bioinformatics 04-18-2013, 01:30 AM
Replies: 32
Views: 35,386
Posted By JahnDavik
Thanks. This is what I'd need. Hope it works :-)

Thanks. This is what I'd need. Hope it works :-)
Forum: Bioinformatics 04-18-2013, 01:27 AM
Replies: 32
Views: 35,386
Posted By JahnDavik
Smile Ad:random sampling in forward and reverse

Thanks for posting this code. I really need it and I really hope it works.
Forum: Bioinformatics 04-18-2013, 01:25 AM
Replies: 32
Views: 35,386
Posted By JahnDavik
Smile Thanks for posting this code. I really need it...

Thanks for posting this code. I really need it and I really hope it works?:)
Forum: Bioinformatics 04-17-2013, 08:22 AM
Replies: 15
Views: 17,357
Posted By JahnDavik
sampling fw and rev

Another one from a biologist: Will this routing sample the pairs belonging to each other? As opposed to a random selection from each of the fw and rev files, I mean.
Forum: RNA Sequencing 04-16-2013, 02:07 AM
Replies: 11
Views: 10,201
Posted By JahnDavik
compressed files

Does it work with .gz files, or do I have to unpack them?
Forum: Bioinformatics 04-15-2013, 12:16 AM
Replies: 2
Views: 3,249
Posted By JahnDavik
Thank you for your prompt reply! There are...

Thank you for your prompt reply!
There are 150-200 mill reads in each of the paired fastq files and I just expected that to be quite redundant.
Forum: Bioinformatics 04-14-2013, 11:39 PM
Replies: 2
Views: 3,249
Posted By JahnDavik
splitting big paired fastq files

Hi there,
I do my 'bioinformatic' work in CLC. Now I sit with many (30) large files with paired end reads (~10GB each direction) and my computer is stalling if I'd try to use all in a de novo...
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