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Forum: Bioinformatics 05-22-2019, 09:04 AM
Replies: 2
Views: 378
Posted By anu18
Thanks. I have a new question now. I was trying...

Thanks. I have a new question now. I was trying to plot the variants stats using plot-vcfstats. i am getting this error. Kindly advise

Parsing bcftools stats output: diploidall.stats
Plotting...
Forum: Bioinformatics 05-13-2019, 12:38 AM
Replies: 2
Views: 378
Posted By anu18
vcf file opening issues with a text editor

Hello,

I have created a vcf file which i can open using bcf tools in the terminal but not in the windows using a text editor. I can see the header information of the vcf file but the actual...
Forum: Bioinformatics 04-18-2019, 07:54 AM
Replies: 0
Views: 336
Posted By anu18
different output from bowtie2 and samtools flagstat

Hello, I am new to bioinformatics and trying to analyse paired end RAD seq data. I have aligned the sequences using bowtie2 and have my output as sorted bam after piping the results straight into...
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