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Forum: Bioinformatics 10-23-2017, 06:23 AM
Replies: 4
Views: 807
Posted By Lukas Hellmann
java version "1.8.0_121" Java(TM) SE Runtime...

java version "1.8.0_121"
Java(TM) SE Runtime Environment (build 1.8.0_121-b13)
Java HotSpot(TM) 64-Bit Server VM (build 25.121-b13, mixed mode)
Forum: Bioinformatics 10-23-2017, 06:10 AM
Replies: 4
Views: 807
Posted By Lukas Hellmann
Yes, I assign memory. I even tried to request...

Yes, I assign memory. I even tried to request huge excess memory to fulfill java requirements, but that did not help. I don't think job submission is the problem, as I have no issues with any other...
Forum: Bioinformatics 10-23-2017, 05:52 AM
Replies: 4
Views: 807
Posted By Lukas Hellmann
Java problem when using BBmap

Hi guys,

I am working on a cluster that was changed to CentOS 7.3.1611 and SLURM scheduler recently. Since the change I cannot use any of the BBmap tools any longer, they all quit with a java...
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