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Forum: Bioinformatics

02-12-2018, 02:45 PM

Replies: 104

Introducing Tadpole: an assembler, error-corrector, and read-extender

Views: 41,689

Posted By susanklein

Yes, that worked. Thanks.

Yes, that worked. Thanks.

Forum: Bioinformatics

02-11-2018, 05:42 PM

Replies: 104

Introducing Tadpole: an assembler, error-corrector, and read-extender

Views: 41,689

Posted By susanklein

Hi, yes I get your point. I have reduced it...

Hi,

yes I get your point. I have reduced it now.. Will update progress.

S.

Forum: Bioinformatics

02-08-2018, 06:34 PM

Replies: 104

Introducing Tadpole: an assembler, error-corrector, and read-extender

Views: 41,689

Posted By susanklein

My mistake - I should have increased Xmx.. not...

My mistake - I should have increased Xmx.. not decreased it. It still seems to be stalling though RAM stays full but cpu activity drops to zero.. assembly never finishes.

S.

Forum: Bioinformatics

02-08-2018, 05:34 PM

Replies: 104

Introducing Tadpole: an assembler, error-corrector, and read-extender

Views: 41,689

Posted By susanklein

Hi, I am getting a memory error with the...

Hi,

I am getting a memory error with the following:
tadpole.sh in=../fasta/2.fasta out=tad2.fa k=96 merge=t overwrite=t

The fasta is interleaved and has 57767162 reads. This is a metagenome...

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