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Search: Posts Made By: vmrosario
Forum: Bioinformatics 04-12-2013, 05:17 PM
Replies: 0
Views: 2,018
Posted By vmrosario
vcf to ped conversion

I'm trying to convert vcf files to ped files, but I get a weird error.

I execute:
vcftools --gzvcf chr23.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.EUR.nosingles.vcf.gz --chr X...
Forum: SOLiD 02-20-2013, 02:25 AM
Replies: 0
Views: 1,811
Posted By vmrosario
Multiple queues for Lifescope

Is it possible to use multiple queues for one installation of Lifescope? For example if I have Lifescope installed is it possible to run one workflow on one queue and another workflow on another...
Forum: Bioinformatics 11-09-2012, 10:19 AM
Replies: 2
Views: 2,174
Posted By vmrosario
Did you already look at identical variants in the...

Did you already look at identical variants in the affected individuals in the same family? Maybe they have the same mutation?
Forum: Bioinformatics 10-18-2012, 12:17 AM
Replies: 3
Views: 1,464
Posted By vmrosario
bash is also an option while read line do ...

bash is also an option

while read line
do
grep "$line" file2.txt
done < file1.txt
Forum: Introductions 10-17-2012, 03:15 AM
Replies: 0
Views: 1,248
Posted By vmrosario
Introduction

hello everybody,
I'm a bioinformatician from Nijmegen with NGS (SOLiD) data and Illumina microarrays.
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