SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 3 of 3
Search took 0.00 seconds.
Search: Posts Made By: SNPsaurus
Forum: Bioinformatics 02-08-2018, 09:03 PM
Replies: 104
Views: 41,659
Posted By SNPsaurus
Do you need to use k=96? That is a large kmer...

Do you need to use k=96? That is a large kmer size and will increase memory demand. A metagenome plus sequence errors will create many 96-mers. What happens with the default k=31... does it run with...
Forum: Bioinformatics 10-16-2015, 10:01 AM
Replies: 104
Views: 41,659
Posted By SNPsaurus
Thanks Brian for the notes. I'm actually using it...

Thanks Brian for the notes. I'm actually using it for assembling data that resembles ChIP-Seq data, with high coverage of random shotgun fragments at discrete loci. The mtDNA is just along for the...
Forum: Bioinformatics 10-15-2015, 10:06 PM
Replies: 104
Views: 41,659
Posted By SNPsaurus
I'm getting a little confused by this...

I'm getting a little confused by this conversation. tadpole does act as an assembler when it isn't in read extend mode, right? I throw reads at it and it generates long contigs (like entire...
Showing results 1 to 3 of 3

 


All times are GMT -8. The time now is 08:53 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO