Forum: Genomic Resequencing
05-29-2015, 12:26 AM
|
|
Replies: 1
Views: 1,960
mutations file
Hello all,
I just finished generating BAM file of resequenced tomato line from paired end (reads size 100bp).
and view it through IGV (aligned to reference genome). Do you familiar with any way...
|
|
Forum: MGISEQ (FKA Complete Genomics)
12-16-2014, 06:04 AM
|
|
Replies: 0
Views: 6,791
Basic bioinformatics for dummy
Hello everyone,
My study involove GWAS methods in tomato. I genotyped 109 lines for 7720 SNP markers and I have the results in excel and here is small example:
SNP NAME CHR POSITION ...
|
|
Forum: Bioinformatics
05-30-2013, 03:01 AM
|
|
Replies: 7
Views: 2,046
|
|
Forum: Bioinformatics
05-18-2013, 12:01 PM
|
|
Replies: 7
Views: 2,046
|
|
Forum: Bioinformatics
05-16-2013, 03:06 AM
|
|
Replies: 7
Views: 2,046
Opening non indexed BAM file
Hi all
I just recieved 11.5GB BAM file and I want to view these sequences.
I read that first i need to index the file and just then to view it in IGV or Genome Workbench. I am really stuck while...
|
|
Forum: Introductions
05-16-2013, 02:58 AM
|
|
Replies: 0
Views: 754
Hello Seq answers members
I am Itay Zemach, M.Sc student in the Hebrew Unoversity of Jerusalem in Dani Zamir lab. Our lab Intersting is Tomato genetics and genomics.
In my study I try to combine phenotyipic and genotypic...
|
