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Forum: Bioinformatics 08-21-2013, 06:43 AM
Replies: 11
Views: 8,042
Posted By SDiehl
In my case gzip was not the problem. For some...

In my case gzip was not the problem. For some strange reason it turned out the be the reference. After I redid the reference everything worked fine again.

As GenoMax already said, most likely you...
Forum: Bioinformatics 05-02-2013, 03:47 AM
Replies: 11
Views: 8,042
Posted By SDiehl
Thanks for the reply JonB. I tried running...

Thanks for the reply JonB. I tried running tophat2 on two different powerful servers which both have much more than 8GB memory.
Forum: Bioinformatics 04-26-2013, 01:24 AM
Replies: 11
Views: 8,042
Posted By SDiehl
I have the same issue: I have enough disk...

I have the same issue:


I have enough disk space and everything. I tried with several versions of tophat2 and bowtie2 and several samples and always the same error. The file...
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