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Forum: Bioinformatics 05-31-2016, 03:15 AM
Replies: 1
Views: 924
Posted By andtill
Thresholds for homozygous genotypes using NGS

When performing variant calling from NGS data, one commonly use (for example) 0.2-0.8 for calling a heterozygous and 0-0.2 or 0.8-1 for calling a homozygous genotype. Allelic imbalance for...
Forum: Bioinformatics 11-09-2012, 12:17 PM
Replies: 1
Views: 2,360
Posted By andtill
How do I extract partial sequence data (Fasta) from multiple hits in NCBI nucleotide?


I would like to extract DNA sequence data from one gene on the mitochondrion for multiple species. At NCBI nucleotide I can search for "mitochondrion complete" and I will get a large list of a...
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