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Search: Posts Made By: ArnieBerg
Forum: Oxford Nanopore 03-11-2020, 06:52 AM
Replies: 4
Views: 2,035
Posted By ArnieBerg
No, have not been able to resolve this.

No, have not been able to resolve this.
Forum: Oxford Nanopore 10-17-2019, 05:07 AM
Replies: 4
Views: 2,035
Posted By ArnieBerg
Still waiting for an answer.

Still waiting for an answer.
Forum: Bioinformatics 06-06-2019, 09:10 AM
Replies: 0
Views: 545
Posted By ArnieBerg
Best practices for restarting Canu failed jobs?

Most of my Canu 1.8 jobs submitted in an HPC grid fail for various reasons. Is there a best practices document or web page that gives guidance for what diagnostic approach to take?
Forum: Oxford Nanopore 04-29-2019, 08:41 AM
Replies: 4
Views: 2,035
Posted By ArnieBerg
Centrifuge-build reports error when building reference index

I have used the follow command sequence to build the reference index for archaea, bacteria and viral genomes:


centrifuge-download -o taxonomy taxonomy
centrifuge-download -o library -m -d...
Forum: Introductions 04-14-2019, 12:04 PM
Replies: 0
Views: 1,058
Posted By ArnieBerg
Post GridION sequencing and assembling

Hi, I am just starting to work with Oxford Nanopore Technology GridION and hope to pick up some tips on what approach to take on assembling bacterial genomes.
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