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Forum: Bioinformatics 12-02-2014, 01:25 PM
Replies: 5
Views: 2,306
Posted By maubp
At the command line, $ blastn -help ... ...

At the command line,

$ blastn -help
...

You are looking for the -outfmt option, which can be simply a number, say 6 for tabular, or a quoted string like "6 std stitlesall" where you list the...
Forum: Bioinformatics 12-02-2014, 10:57 AM
Replies: 5
Views: 2,306
Posted By maubp
Given you want to make a CSV file, why mess about...

Given you want to make a CSV file, why mess about with XML? One of the best things in BLAST+ is the pick-your-own columns in tabular or CSV output.
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