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Search: Posts Made By: sanjeevksh
Forum: Introductions 07-30-2016, 02:56 AM
Replies: 6
Views: 2,186
Posted By sanjeevksh
Thanks for the replies. However, I was looking...

Thanks for the replies. However, I was looking for a vcf to gvf converter and not to gvcf. I found very useful set of scripts located here: https://github.com/cfljam/galaxy-pcr-markers

Regards,
Forum: Introductions 05-13-2016, 03:59 PM
Replies: 6
Views: 2,186
Posted By sanjeevksh
vcf to gvf conversion

Dear All,
Is there any tool available to convert vcf file to gvf file?
Regards,
Forum: Bioinformatics 04-24-2014, 11:11 AM
Replies: 6
Views: 3,308
Posted By sanjeevksh
MD gives a string so 'XM:i:<N>' field may be more...

MD gives a string so 'XM:i:<N>' field may be more helpful in this context?

Cheers!
Forum: Bioinformatics 04-24-2014, 07:53 AM
Replies: 6
Views: 3,308
Posted By sanjeevksh
Hi mastal and dpryan, Thanks for your...

Hi mastal and dpryan,

Thanks for your replies, are very helpful indeed.

@mastal:
I was not referring to the mismatches in the seed region which -N (0 or 1) actually pertains to but for the...
Forum: Bioinformatics 04-23-2014, 10:44 AM
Replies: 6
Views: 3,308
Posted By sanjeevksh
Bowtie2 --score-min or mismatch setting

Dear All,

I am trying to figure out how to set a mismatch (--score-min) value in Bowtie2. On the forum I have seen '--score-min' settings like 'L, -0.5,-0.2', 'C,0,0', 'C,-1,0' and the assigned...
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