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Search: Posts Made By: Strand SI
Forum: Events / Conferences 04-09-2012, 03:38 AM
Replies: 0
Views: 1,498
Posted By Strand SI
Webinar on How to Find SNPs

Free Webinar on How to Find SNPs

SNP verification and prioritization is one of the most time consuming tasks in variant analysis. The workflows in Avadis NGS 1.3 (http://www.avadis-ngs.com) make...
Forum: Events / Conferences 02-16-2012, 01:58 AM
Replies: 0
Views: 2,526
Posted By Strand SI
Benchtop Sequencing Data Analysis - Webinar Series

We are hosting an online seminar series (http://blog.avadis-ngs.com/2012/02/webinar-series-benchtop-sequencing-data-analysis/) on the alignment and analysis of genomics data from “benchtop”...
Forum: Vendor Forum 02-08-2012, 12:00 AM
Replies: 0
Views: 2,150
Posted By Strand SI
Avadis NGS 1.3 – Release Announcement

We are really happy to announce that version 1.3 of Avadis NGS (http://avadis-ngs.com) is now available. Special thanks to everyone who participated in the Beta program and helped us by providing...
Forum: Bioinformatics 12-15-2011, 02:20 AM
Replies: 34
Views: 17,870
Posted By Strand SI
Yes, you can import paired end reads generated...

Yes, you can import paired end reads generated from any next-gen sequencing platform, including Illumina HiSeq.

Avadis NGS 1.3 will support alignment for raw DNA and small RNA reads. When setting...
Forum: Events / Conferences 11-23-2011, 05:19 AM
Replies: 1
Views: 1,996
Posted By Strand SI
Webinar on Alignment of Raw Sequence Reads - FREE

Aligners for next-generation sequencing data are typically limited to either a specific class of reads or alignment characteristics. COBWEB is a new alignment algorithm designed to handle both short...
Forum: Events / Conferences 10-17-2011, 01:16 AM
Replies: 0
Views: 2,360
Posted By Strand SI
Webinar on Small RNA Analysis - FREE

The upcoming release of Avadis NGS (http://avadis-ngs.com) 1.3 will provide full support for analyzing deep sequencing reads generated using small RNA sequencing protocols.

In this webinar...
Forum: Bioinformatics 09-11-2011, 11:35 PM
Replies: 1
Views: 2,204
Posted By Strand SI
You are welcome to try Avadis NGS...

You are welcome to try Avadis NGS (http://avadis-ngs.com) for your analysis.

Disclaimer: we are the developers, but felt it was fair to suggest it in light of the other tools you said you tried.
Forum: Events / Conferences 09-09-2011, 06:33 PM
Replies: 0
Views: 3,966
Posted By Strand SI
Webinar on Quality Control of NGS Data - FREE

Sort the wheat from the chaff before making your bread!

Quality control (QC) is an essential step before analyzing NGS data. It is important to learn how to perform QC effectively because the...
Forum: Events / Conferences 08-09-2011, 10:33 PM
Replies: 1
Views: 3,654
Posted By Strand SI
Post Webinar of the Month: Pathway Analysis in Avadis NGS

This August, find out how to perform Pathway Analysis on your next-gen sequencing analysis results in Avadis NGS!

Learn how to:


effectively query the built-in interaction databases to detect...
Forum: Events / Conferences 07-11-2011, 12:46 AM
Replies: 0
Views: 2,247
Posted By Strand SI
Post Avadis NGS webinars in July!

New to NGS data analysis?

Sign up (http://www.avadis-ngs.com/webinar_registration) for one of our free webinars in July to see how Avadis NGS (http://www.avadis-ngs.com)
can help you analyze...
Forum: Events / Conferences 06-24-2011, 02:20 AM
Replies: 0
Views: 2,137
Posted By Strand SI
Post Webinar on Analyzing Cancer Data with Avadis NGS on 30 June!

Join us for a webinar focusing on the analysis of NGS data in the context of cancer biology using the various analysis
and biological interpretation tools available in the RNA-Seq and DNA-Seq...
Forum: Events / Conferences 06-16-2011, 07:45 AM
Replies: 0
Views: 1,809
Posted By Strand SI
Post Get BIOBASE Genome Trax in Avadis NGS

We have have joined forces with BIOBASE to bring you one of BIOBASE's latest
biological databases - BIOBASE Genome Trax (http://www.biobase-international.com/index.php?id=genometrax) - as...
Forum: Events / Conferences 06-01-2011, 03:24 AM
Replies: 0
Views: 2,183
Posted By Strand SI
Post New Avadis NGS Webinar topics available in June!

We have added several new topics to our webinar series this month, including more detailed sessions
on the functionality of our Avadis NGS Genome Browser...
Forum: Bioinformatics 05-25-2011, 07:48 AM
Replies: 11
Views: 6,946
Posted By Strand SI
add differing chromosome names as aliases

There's no need to rename the chromosomes in your file. In Avadis NGS, you can look up what the actual chromosome names in your file are and then add those chromosome names as aliases in the...
Forum: Bioinformatics 05-17-2011, 11:01 AM
Replies: 11
Views: 6,946
Posted By Strand SI
Dear NGS Newbie, Chances are that the...

Dear NGS Newbie,

Chances are that the chromosome name used in the imported sample and the chromosome name used in the Avadis NGS rn4 build are not matching. Typically it is a simple issue of...
Forum: Events / Conferences 05-02-2011, 09:24 PM
Replies: 0
Views: 2,583
Posted By Strand SI
Post Avadis NGS May 2011 Webinar Series

Here’s our May 2011 schedule for the free Avadis NGS DNA-Seq, RNA-Seq and Introductory webinars.
To attend one of them, just register here (http://www.avadis-ngs.com/webinar_registration)!
...
Forum: Bioinformatics 04-21-2011, 08:39 AM
Replies: 292
Views: 155,562
Posted By Strand SI
I converted some ELAND export files to SAM and...

I converted some ELAND export files to SAM and now tried to make BAM files out of those, but it is complaining about @SQ headers not being there?!
Does the export2sam.pl tool not create a SAM file...
Forum: Vendor Forum 04-12-2011, 12:50 AM
Replies: 0
Views: 1,768
Posted By Strand SI
Avadis NGS version 1.2 available now!

Version 1.2 incorporates new features, some bug fixes, and several enhancements, most importantly the following:


Differential SNP analysis has been added to the RNA-Seq and DNA-Seq workflows to...
Forum: Events / Conferences 04-11-2011, 06:27 AM
Replies: 0
Views: 1,859
Posted By Strand SI
Post New Avadis NGS DNA-Seq Webinar

As promised we've scheduled a free webinar focusing only on the DNA-Seq workflow in Avadis NGS at the end of April 2011.

This new webinar will cover how you can detect and predict the effect of...
Forum: RNA Sequencing 04-05-2011, 10:03 AM
Replies: 7
Views: 3,077
Posted By Strand SI
Thanks for the feedback

Thank you to 'rnaseq' for the positive review -- we were pleasantly surprised to see this. Our engineering and support teams work around-the-clock to build and maintain Avadis NGS, and were uplifted...
Forum: Events / Conferences 04-04-2011, 10:39 PM
Replies: 0
Views: 1,728
Posted By Strand SI
Post More Avadis NGS Intro and RNA-Seq webinars in April 2011

We have scheduled more free Introductory and RNA-Seq Webinars on Avadis NGS throughout April 2011. Just register via our website (http://www.avadis-ngs.com/webinar_registration)!

Introductory...
Forum: Bioinformatics 03-14-2011, 10:10 PM
Replies: 34
Views: 17,870
Posted By Strand SI
Post Thank you for trying Avadis NGS (version 1.1.1)...

Thank you for trying Avadis NGS (version 1.1.1) and letting us and others know about your experience. It is nice to get such comprehensive feedback on our product – because the more feedback we get,...
Forum: Events / Conferences 03-14-2011, 09:44 PM
Replies: 4
Views: 2,704
Posted By Strand SI
Post New webinars on RNA-Seq in Avadis NGS in March 2011

Dear all,

as requested by many of those who attended our introductory webinars (like honey), we are now offering free webinars specialising on RNA-Seq data analysis in Avadis NGS. Just register...
Forum: Events / Conferences 02-20-2011, 11:48 PM
Replies: 4
Views: 2,704
Posted By Strand SI
Post More detailed Avadis NGS webinars coming soon!

Thank you honey for your feedback on our introductory webinars.

We are already working on more detailed seminars on just RNA-Seq and the other workflows, which will be available soon. For now we...
Forum: Events / Conferences 02-17-2011, 10:11 PM
Replies: 4
Views: 2,704
Posted By Strand SI
Post Free Avadis NGS webinar on 23 February 2011

Want to find out more about Avadis NGS and how it can help you analyze RNA-Seq, DNA-Seq or ChIP-Seq data? Just register for our free interactive webinar at:
...
Showing results 1 to 25 of 26

 


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