Forum: Bioinformatics
03-29-2010, 11:52 PM
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Replies: 2
Views: 1,452
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Forum: Bioinformatics
03-29-2010, 10:33 PM
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Replies: 2
Views: 1,452
novoalign GLIBC error
Hi,
I am going to use novoalign for PE reads and I got the following error message:
$ novoalign -f s_1_1_.fq s_1_2_.fq -d hg19
novoalign: /lib64/libc.so.6: version `GLIBC_2.7' not found...
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Forum: Bioinformatics
02-17-2010, 06:28 PM
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Replies: 2
Views: 2,481
cuffcompare output statistic
I got cuffcompare output something like below:
==================
# Query mRNAs : 250371 in 250079 loci (24778 multi-exon transcripts)
# (282 multi-transcript loci, ~1.0...
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Forum: Bioinformatics
02-16-2010, 12:25 AM
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Replies: 3
Views: 7,517
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Forum: Bioinformatics
02-15-2010, 06:37 PM
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Replies: 3
Views: 7,517
BWA 'make' error
I just want to use BWA-0.5.6 for mapping 454 reads on Linux. I got error message like this;
=========
$ make
make[1]: Entering directory `/home/yago/bwa-0.5.6'
make[1]: Nothing to be done for...
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Forum: Bioinformatics
02-08-2010, 11:54 PM
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Replies: 4
Views: 2,193
I added the '--segment-length 25', but the...
I added the '--segment-length 25', but the comment is still as follows;
[Tue Feb 9 16:47:40 2010] Checking reads
seed length: 43bp
format: fastq
quality scale: --phred33-quals
Did I...
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Forum: Bioinformatics
02-08-2010, 11:36 PM
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Replies: 4
Views: 2,193
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Forum: Bioinformatics
02-08-2010, 10:06 PM
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Replies: 4
Views: 2,193
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Forum: Bioinformatics
02-08-2010, 02:04 AM
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Replies: 4
Views: 2,193
tophat running problem
Hi all,
I'm trying to run mRNA-seq for human by tophat (v1.0.12).
I succeeded to get proper output file in the preliminary dataset (first 100K reads from each .fq file). But I failed to get...
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Forum: Bioinformatics
08-09-2009, 06:34 PM
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Replies: 18
Views: 14,860
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