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Forum: Bioinformatics 10-25-2011, 03:08 PM
Replies: 2
Views: 2,951
Posted By pbatzel
Hi swbarnes thanks for your reply. Yes, not...

Hi swbarnes thanks for your reply.

Yes, not knowing the biology behind it, the barcodes are somewhat magical to me (although I suppose a lot of this is). My very rough understanding of it is that...
Forum: Bioinformatics 10-25-2011, 01:55 PM
Replies: 9
Views: 3,627
Posted By pbatzel
I'm still pretty new to Bioinformatics, but I...

I'm still pretty new to Bioinformatics, but I started out with http://biopython.org/wiki/Main_Page and never looked back. Python is a fairly easy to learn language in my opinion and while biopython...
Forum: Bioinformatics 10-25-2011, 01:05 PM
Replies: 2
Views: 2,951
Posted By pbatzel
Illumina1.8 Paired-End Barcode Splitting?

Hi everyone,

Hopefully this is a pretty simple question with a pretty simple answer. I've been using a pipeline for pre-processing Illumina1.8, fresh off the sequencer, data. The pipeline puts...
Forum: Bioinformatics 08-25-2011, 12:09 PM
Replies: 2
Views: 2,647
Posted By pbatzel
@westerman: Thanks for the welcome! Sadly I...

@westerman:
Thanks for the welcome! Sadly I know that this is a fairly complex problem (but maybe fairly common too?) and that the solutions I presented may be complex. What I'm really hoping for...
Forum: Bioinformatics 08-24-2011, 01:20 PM
Replies: 2
Views: 2,647
Posted By pbatzel
Large RAM Requirements and Clusters/Clouds

Hello people of the forum, I'm new here and am hoping you all can help me with a hypothetical.

Let's say I have access to a cluster, or even a cloud. I want to run genomic/transcriptomic assembly...
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