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Search: Posts Made By: SaraYones
Forum: Bioinformatics 02-02-2018, 12:20 AM
Replies: 0
Views: 413
Posted By SaraYones
Merging CNV data with Mutation data and running on MutSigCV

I am trying to find the most significant altered genes and I was thinking of using only 1 tool for significance test which is MutSigCV instead of MutSigCV for mutation data and GISTIC for CNV data. I...
Forum: Bioinformatics 09-19-2017, 01:36 AM
Replies: 1
Views: 541
Posted By SaraYones
converted TCGA file to bed format but it doesn't want to be read in R

I used a tool to download TCGA data and convert it into BED format it is called TCGA2BED https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1419-5

when i open the bed file it...
Forum: RNA Sequencing 08-29-2017, 01:31 AM
Replies: 1
Views: 856
Posted By SaraYones
detection of somatic mutations using RNA seq data for tumor samples paired with WES

i have WES data for normal and I have RNA seq only for tumor. I want to use the RNA seq data to detect somatic driver mutations and I want to pair it with the normal WES data in order to be able to...
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