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Forum: Bioinformatics 12-23-2019, 05:31 PM
Replies: 0
Views: 927
Posted By igwill
WGS upload prep - table2asn

Hi,

I've wrapped up an assembly and will soon be uploading a new genome and annotations to NCBI - but am having a little trouble with getting everything packaged nicely for GenBank.

I have a...
Forum: Oxford Nanopore 11-06-2018, 05:54 AM
Replies: 1
Views: 3,006
Posted By igwill
Two sets of .fast5 files from Nanopore

Hi,

I am trying to Nanopolish a draft Nanopore genome I assembled with Canu.
For my indexing step, I have two folders in the data given to me by the sequencing service that contain fast5 files....
Forum: Bioinformatics 11-04-2018, 03:16 PM
Replies: 1
Views: 692
Posted By igwill
Just for anyone wandering in later with a similar...

Just for anyone wandering in later with a similar question, after getting some more info, we are trying this:


#SBATCH --nodes=4
#SBATCH --ntasks-per-node=8
#SBATCH –-mem=128000
#SBATCH...
Forum: Bioinformatics 11-03-2018, 11:50 AM
Replies: 1
Views: 692
Posted By igwill
Speeding Up Soapdenovo2

Hi,
I am working on some de novo assemblies with Soapdenovo2 with the multi-mer option, and wanted to know if anyone has experience with getting these crunched quickly-ish.
Specifically, can Soap...
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