SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 16 of 16
Search took 0.00 seconds.
Search: Posts Made By: Bara'a Al-Hammad
Forum: Bioinformatics 03-13-2016, 12:59 PM
Replies: 2
Views: 1,084
Posted By Bara'a Al-Hammad
Thanks a lot GenoMax for the answer , I truly...

Thanks a lot GenoMax for the answer , I truly appreciate your help :)

I do realize that not all phylums are completely sequenced on chromosome level, but I needed this type of data to prove some...
Forum: Bioinformatics 03-09-2016, 12:28 PM
Replies: 2
Views: 1,084
Posted By Bara'a Al-Hammad
Complete Genomes on chromosome level

Hi all :)

Where can I find a credible and reliable source (website) for downloading genomes on chromosome level only ?!

I don't want contigs or scaffolds, or even cDNAs !!

Thanks in advance...
Forum: Bioinformatics 02-20-2015, 08:05 AM
Replies: 0
Views: 1,216
Posted By Bara'a Al-Hammad
Post Difference Values from Clustal Omega

Hi :)

How can I find difference values based on similarity distance matrices produced by clustal omega ?!

If I have a sample in percentage format like this :

Traes_2BL_B2871DAAB.1_1...
Forum: Introductions 01-03-2015, 05:02 AM
Replies: 1
Views: 926
Posted By Bara'a Al-Hammad
Happy New Year to you too iStar :)

Happy New Year to you too iStar :)
Forum: Introductions 01-03-2015, 05:00 AM
Replies: 2
Views: 1,099
Posted By Bara'a Al-Hammad
Welcome on board , sarodocsaro :) benvenuto...

Welcome on board , sarodocsaro :)

benvenuto ;)
Forum: Bioinformatics 12-22-2014, 01:42 AM
Replies: 5
Views: 3,965
Posted By Bara'a Al-Hammad
You were absolutely right :) So , the...

You were absolutely right :)

So , the solution was just to provide the full path of the executable (clustalo.exe) to the CMD , along with the query .

This works perfectly :D
Forum: Bioinformatics 12-20-2014, 05:59 AM
Replies: 5
Views: 3,965
Posted By Bara'a Al-Hammad
So I'm not the only one who thought that it was...

So I'm not the only one who thought that it was weird to have (INSTALL.txt) in a windows package!!

I think such mistake could definitely consume memory as it leads to unnecessary installation's...
Forum: Bioinformatics 12-20-2014, 02:16 AM
Replies: 5
Views: 3,965
Posted By Bara'a Al-Hammad
Because it's not working !! I tried to...

Because it's not working !!

I tried to follow the installations instructions in the INSTALL.txt file , but when I came across argtable2 installation according to this reference (...
Forum: Bioinformatics 12-19-2014, 02:10 PM
Replies: 5
Views: 3,965
Posted By Bara'a Al-Hammad
Post Confusion with Clustal Omega installation on Windows 7 64bit

Hi :)

I have been trying to install Clustal Omega on my Windows 7 64bit platform for a whole week but it's not getting configured correctly , it's really driving me crazy .

I followed the...
Forum: Bioinformatics 12-15-2014, 02:00 AM
Replies: 8
Views: 1,942
Posted By Bara'a Al-Hammad
Thank you Peter for clarifying this :)

Thank you Peter for clarifying this :)
Forum: Bioinformatics 12-12-2014, 04:49 AM
Replies: 8
Views: 1,942
Posted By Bara'a Al-Hammad
Can't thank you enough : Peter and GenoMax , I'm...

Can't thank you enough : Peter and GenoMax , I'm so grateful for your help .

I already knew that I should add some environmental variable to fix this , but it's really weird how it didn't work...
Forum: Bioinformatics 12-12-2014, 04:31 AM
Replies: 8
Views: 1,942
Posted By Bara'a Al-Hammad
Many thanks for your replies : GenoMax and Peter...

Many thanks for your replies : GenoMax and Peter , it really helped a lot .

But now I'm facing another problem :(

I tried to do a very simple alignment task just to test the program , and it...
Forum: Bioinformatics 12-11-2014, 09:09 AM
Replies: 0
Views: 683
Posted By Bara'a Al-Hammad
Extracting protein SSR's

Hi all :)

What is the best tool recommended to extract Simple Sequence Repeats ( SSR's ) from Protein ( amino acid ) sequences ?

Any tutorials or guidelines would be very helpful .

Thanks in...
Forum: Bioinformatics 12-11-2014, 08:48 AM
Replies: 8
Views: 1,942
Posted By Bara'a Al-Hammad
Problem configuering clustalW2 on windows

Hello ...

How can I configure clustalW2 on windows , so I can use it via command line and biopython scripts ?

I tried to use it from within cmd but it gives me this :
'clustalW2' is not...
Forum: Bioinformatics 05-18-2014, 01:06 AM
Replies: 0
Views: 925
Posted By Bara'a Al-Hammad
Detecting plants Microsatellites

Hello ...

I'm working on a thesis in bioinformatics , and I need to accomplish the following task using BLAST plant EST database .

Given 10 different plant species , I need to test the...
Forum: Bioinformatics 02-23-2014, 05:10 AM
Replies: 0
Views: 1,060
Posted By Bara'a Al-Hammad
How to employ Synteny based analysis to perform these objectives ?

Hi all .

I'm new to this field as I'm working on my thesis , and I'm kind of lost here .

My main objective is to prove the hypothesis assumes that Microsatellites regions in plants genomes...
Showing results 1 to 16 of 16

 


All times are GMT -8. The time now is 09:27 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO