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Forum: RNA Sequencing 01-29-2014, 09:21 AM
Replies: 3
Views: 2,007
Posted By tschauer
Hi Simon, The DESeq2 vignette (HTSeg input)...

Hi Simon,

The DESeq2 vignette (HTSeg input) confused me about this. The "_lowaqual" is still in there. See

ddsHTSeq
class: DESeqDataSet
dim: 70467 7
exptData(0):
assays(1): counts...
Forum: Bioinformatics 12-18-2012, 03:45 AM
Replies: 2
Views: 1,506
Posted By tschauer
Thanks for the quick reply. I also assumed...

Thanks for the quick reply.

I also assumed so that these are only the "connections". In that case these graphs have to be read somewhat differently...
Forum: Bioinformatics 12-18-2012, 02:05 AM
Replies: 2
Views: 1,506
Posted By tschauer
bowtie2 vs. Tophat2 RNA-Seq

Hi,

I have PE 100 Drosophila HiSeq RNA-Seq data. I mapped the same data using Tophat2 (changed only the inner distance estimated by Cufflinks) and Bowtie2 against the genome.

I converted the...
Forum: RNA Sequencing 12-13-2012, 02:07 AM
Replies: 6
Views: 2,556
Posted By tschauer
thanks samtools was not correctly installed ...

thanks

samtools was not correctly installed

without GTF it works
Forum: RNA Sequencing 12-06-2012, 02:09 AM
Replies: 6
Views: 2,556
Posted By tschauer
Hi, Same problem... Did you guys solve...

Hi,

Same problem...

Did you guys solve it?
Forum: Bioinformatics 10-22-2012, 08:01 AM
Replies: 42
Views: 12,700
Posted By tschauer
Hi All, I am getting this error message on...

Hi All,

I am getting this error message on Mac OS X 10.5.8

Could you please help me what did I install wrong?

Thanks in advance!
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