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Forum: Academic/Non-Profit Jobs 03-21-2016, 02:44 PM
Replies: 0
Views: 1,677
Posted By Arouth
Post Post-Doc positions developing NGS to study RNA virus evolution at UTMB, Texas.

We have immediate openings for talented post-doctoral scholars in a new laboratory at the University of Texas Medical Branch (UTMB) located in Galveston, Texas. The laboratory is headed by Dr. Andrew...
Forum: Bioinformatics 02-12-2014, 10:46 AM
Replies: 3
Views: 2,841
Posted By Arouth
ViReMa: an algorithm for finding viral recombination or fusion events in NGS data

Hi all,

I have written and made available an algorithm I wrote in Python called ViReMa: a Viral Recombination Mapper.

The purpose of the script is to find reads that map over recombination or...
Forum: Bioinformatics 04-14-2013, 10:51 AM
Replies: 13
Views: 8,873
Posted By Arouth
Hi, I had a similar problem. You may have to...

Hi,
I had a similar problem. You may have to specify the accession directly using the '-A' option. Without this, the accession is taken directly from <path>.

For example, if this fails:...
Forum: Bioinformatics 01-17-2013, 10:52 AM
Replies: 0
Views: 1,239
Posted By Arouth
Bowtie quality values in command line?

Dear all,

I am wondering whether there is a way to enter the quality scores from a read directly into the command line when running bowtie rather than open the actual read file.

It is possible...
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