Forum: Bioinformatics
11-14-2013, 03:50 AM
|
|
Replies: 1
Views: 1,156
|
|
Forum: Bioinformatics
06-06-2013, 06:24 PM
|
|
Replies: 2
Views: 5,867
Thank you for your reply!
Do you mean the...
Thank you for your reply!
Do you mean the function Bio::Search::SearchUtils::tile_hsps($hit)?
I have checked the usage, but I am afraid that I still need a simple practical example, even if only...
|
|
Forum: Bioinformatics
06-06-2013, 05:45 PM
|
|
Replies: 2
Views: 1,827
Thanks for your reply!
I tried the...
Thanks for your reply!
I tried the $hit->next_hsp before, but running the script still informed me the same error. However, today I have just reruned the script, both $hit->next_hsp and $hit->hsp...
|
|
Forum: Bioinformatics
06-05-2013, 09:26 PM
|
|
Replies: 2
Views: 1,827
Errors in my bioperl script. Thanks in advance!
Dear friends:
I have a blast report, and want to extract following information for each result(query): the Query_name, hit_number, name and description of the hit(HSP) with the highest identity.
...
|
|
Forum: Bioinformatics
05-24-2013, 07:17 AM
|
|
Replies: 2
Views: 5,867
how to merge contiguous blast hsps! (-m 8 tab)
Hi, guys!
I performed blastx (-m 8) using a query file of many sequences, and for each target sequence, the output contains many fragmental hsps of significance, and these hsps have overlap...
|
|
Forum: Bioinformatics
04-18-2013, 05:53 PM
|
|
Replies: 2
Views: 1,962
thank you for your reply!
actually, what you...
thank you for your reply!
actually, what you mentioned may typify one of the cases. then here i performed a tblastx using two genome sequences and found some of the hits per query had close...
|
|
Forum: Bioinformatics
04-18-2013, 09:24 AM
|
|
Replies: 2
Views: 1,962
|
|
Forum: Bioinformatics
12-27-2012, 04:53 AM
|
|
Replies: 4
Views: 2,525
|
|
Forum: Bioinformatics
12-22-2012, 07:19 PM
|
|
Replies: 4
Views: 2,525
|
|
Forum: Bioinformatics
12-11-2012, 01:38 AM
|
|
Replies: 40
Views: 21,282
|
|
Forum: Bioinformatics
11-27-2012, 10:13 PM
|
|
Replies: 0
Views: 1,007
Hi, Anybody used P-Clouds? thanks
I have studied P-Clouds——a tool to annotate repeat sequences in genomes ——for several days, but many problems troubled me!
when I changed the parameters in the control file, it always reported...
|
|
Forum: Bioinformatics
11-27-2012, 08:57 PM
|
|
Replies: 15
Views: 7,995
|
|
Forum: Bioinformatics
11-27-2012, 08:32 PM
|
|
Replies: 40
Views: 21,282
|
|
Forum: Introductions
09-26-2011, 01:42 AM
|
|
Replies: 2
Views: 2,207
hello, i am a novice but interested in NGS！
how many kinds of NGS are there nowadays? and whether the sequencing efficiency and ability of each of these approaches exist corresponding sample bias, that is to say, maybe some approches are more...
|
