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Forum: Bioinformatics 07-19-2017, 08:47 PM
Replies: 0
Views: 591
Posted By lagrace
NA's in data (using TopHat-HTSeq-DESeq)

Hello all,

I have some data that I have retrieved from GEO. I am using the TopHat-HTSeq-DESeq pipeline to analyze this data. Within linux, I am using R and ran into an issue with NA's in the...
Forum: Bioinformatics 06-26-2017, 03:44 AM
Replies: 2
Views: 1,110
Posted By lagrace
Thank you so very much neavemj!!!!

Thank you so very much neavemj!!!!
Forum: Bioinformatics 06-23-2017, 05:19 PM
Replies: 2
Views: 1,110
Posted By lagrace
TopHat-HTSeq-DESeq pipeline (HELP PLEASE!)

Hello all,

I am having an issue with importing my information(6 .txt files) within the directory using Linux and R. The pipeline that I am using is TopHat-HTSeq-DESeq. This may be simple,...
Forum: Introductions 06-20-2017, 07:21 PM
Replies: 0
Views: 886
Posted By lagrace
Lightbulb TopHat-Cufflinks-Cummerbund Pipeline

Hello, hope all is well.

Below are two helpful codes to bypass a rsql error while using R in a linux environment (unix-like environment). Once you have created your diff_out directory, use R to...
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