Forum: Bioinformatics
05-06-2020, 01:00 PM
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Replies: 1
Views: 1,602
GTEx PLINK format
Can anyone tell me that how are the PILOT data in GTEx format arranged. I mean PLINK states that for each row in .MAP file there are 2 columns for genotype information in .PED file. However, for GTEx...
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Forum: Bioinformatics
05-06-2020, 12:54 PM
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Replies: 0
Views: 645
GTEx PLINK FILES
Can anyone tell me that how are the PILOT data in GTEx format arranged. I mean PLINK states that for each row in .MAP file there are 2 columns for genotype information in .PED file. However, for GTEx...
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Forum: Introductions
05-06-2020, 12:49 PM
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Replies: 1
Views: 978
GTEx PLINK format
Can anyone tell me that how are the PILOT data in GTEx format arranged. I mean PLINK states that for each row in .MAP file there are 2 columns for genotype information in .PED file. However, for GTEx...
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Forum: Bioinformatics
05-23-2019, 11:47 AM
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Replies: 3
Views: 3,171
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Forum: Bioinformatics
05-23-2019, 08:13 AM
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Replies: 3
Views: 3,171
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Forum: Bioinformatics
08-02-2014, 08:14 AM
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Replies: 5
Views: 1,588
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Forum: Academic/Non-Profit Jobs
08-01-2014, 10:22 PM
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Views: 2,475
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Forum: Academic/Non-Profit Jobs
08-01-2014, 10:17 PM
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Replies: 1
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Forum: Academic/Non-Profit Jobs
08-01-2014, 10:13 PM
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Replies: 1
Views: 1,243
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Forum: Bioinformatics
08-01-2014, 09:52 PM
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Replies: 5
Views: 1,588
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Forum: Service Providers
07-21-2014, 12:10 PM
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Replies: 14
Views: 14,142
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Forum: Bioinformatics
09-09-2010, 07:37 AM
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Replies: 292
Views: 161,306
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Forum: Bioinformatics
09-07-2010, 10:57 AM
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Replies: 292
Views: 161,306
sam to bam conversion not taking place
samtools import example.sam example.bam
This command does not work. Gives error:
Usage: bamtk import <in.ref_list> <in.sam> <out.bam>
What to do? What is in.ref_list ?
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Forum: Bioinformatics
09-03-2010, 03:46 PM
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Replies: 292
Views: 161,306
I converted the all.map file generated from MAQ...
I converted the all.map file generated from MAQ tool to SAM format using maq2sam-long in samtools. The output file I named as Out. Now when I try to convert Out file (which is in SAM format) to BAM...
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Forum: Bioinformatics
09-03-2010, 03:09 PM
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Replies: 292
Views: 161,306
I was trying to convert my single read illumina...
I was trying to convert my single read illumina file to SAM format using the export2sam.pl script. It does not work and gives the following error:
Use of uninitialized value $t[21] in string ne at...
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