SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 4 of 4
Search took 0.00 seconds.
Search: Posts Made By: Gus
Forum: RNA Sequencing 01-03-2011, 01:06 PM
Replies: 7
Views: 2,520
Posted By Gus
Thanks again in advance. I will work that up...

Thanks again in advance.

I will work that up and see if i can fuse it to the rest of the ref.jar building process of myrna. Once again, would you mind if I post the final product to my blog (with...
Forum: RNA Sequencing 01-03-2011, 09:29 AM
Replies: 7
Views: 2,520
Posted By Gus
I spoke too soon. It seems that the problem is...

I spoke too soon. It seems that the problem is not the R code per se it is in fact the metazoa.ensembl schema or something similar. It seems that in the "normal" ensembl DBs all of the following...
Forum: RNA Sequencing 01-03-2011, 08:54 AM
Replies: 7
Views: 2,520
Posted By Gus
Thanks, I just gave this a quick try in the R...

Thanks, I just gave this a quick try in the R terminal and it seems to work for me too. I am going to try to integrate it into the Ensembl.R script in myrna. If it works would you mind if I publish...
Forum: RNA Sequencing 01-03-2011, 01:45 AM
Replies: 7
Views: 2,520
Posted By Gus
can myrna build ref jar files from metazoa.ensembl.org databases?

I have tried to alter the Ensembl.R script to use the correct "mart" by altering the the respective line to:

ensembl = useMart("metazoa_mart_7", dataset=paste(organism, "_eg_gene", sep=""))
...
Showing results 1 to 4 of 4

 


All times are GMT -8. The time now is 08:54 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO