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Forum: Bioinformatics 05-21-2013, 01:39 PM
Replies: 5
Views: 13,204
Posted By mturchin20
So I've looked into this a little further and...

So I've looked into this a little further and thought I'd just put up what I'm currently thinking in case anyone has something else to contribute.

It looks like while the bwa samse/sampe produces...
Forum: Bioinformatics 05-20-2013, 03:06 PM
Replies: 5
Views: 13,204
Posted By mturchin20
BWA-MEM and X0/X1/etc flags

Hey everyone,

I'm currently running bwa mem on some 454 single-end reads I have. My past experience with the bwa/samtools setup was with Illumina paired-end reads and using bwa aln/sampe...
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