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Forum: Introductions 05-09-2012, 08:48 AM
Replies: 22
Views: 21,772
Posted By archie.chauhan
thanks a lot.

thanks a lot.
Forum: Introductions 05-09-2012, 08:09 AM
Replies: 22
Views: 21,772
Posted By archie.chauhan
Hi sorry for the delayed response. I did "less...

Hi sorry for the delayed response. I did "less +1000000" and the data looked good.

I have a few more queries:
1) I can see both the sequences flagged with "N" and "Y" which indicated that the...
Forum: Introductions 05-07-2012, 01:11 PM
Replies: 22
Views: 21,772
Posted By archie.chauhan
just a follow up of the above. illumina support...

just a follow up of the above. illumina support has the following answer to the problem and i did find that the seq in the middle are good.

"The data that you provided looks to be very normal....
Forum: Introductions 05-07-2012, 08:34 AM
Replies: 22
Views: 21,772
Posted By archie.chauhan
thanks a lot...it helped

thanks a lot...it helped
Forum: Introductions 05-07-2012, 08:24 AM
Replies: 22
Views: 21,772
Posted By archie.chauhan
thanks for the response. the pattern looks same...

thanks for the response. the pattern looks same in almost all the sample? Is this a problem with the library preparation or just sequencing run problem?

I want to elaborate on my second question:...
Forum: Introductions 05-07-2012, 07:59 AM
Replies: 22
Views: 21,772
Posted By archie.chauhan
We got our illumina paired end data for 2x 100bp...

We got our illumina paired end data for 2x 100bp run processed from CASAVA 1.8 (demultiplexed fastq files). Since this is our very first run and we are a newbie to the downstream illumina data...
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