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Forum: Bioinformatics 09-08-2015, 07:29 AM
Replies: 1
Views: 792
Posted By annrose
samtools faidx error

Hi... am having problem in indexing genome file. .can you tell how can i correct the length?? like what script i should use


samtools faidx hg19.fa
[fai_build_core] different line length in...
Forum: General 09-08-2015, 07:06 AM
Replies: 3
Views: 4,397
Posted By annrose
samtools faidx hg19.fa [fai_build_core]...

samtools faidx hg19.fa
[fai_build_core] different line length in sequence 'chrY'

hi i have the same problem.....can you tell how can i correct the length?? i am very new to these stuff
Forum: Sample Prep / Library Generation 09-04-2015, 01:54 AM
Replies: 69
Views: 49,479
Posted By annrose
Hi all I am trying to do ATAC-seq on...

Hi all

I am trying to do ATAC-seq on fromaldehyde fixed cells. But dont have much sucess with it. Was wondering if any of you have tried it ......any suggestion will be of great help...
Forum: Epigenetics 06-10-2014, 11:57 AM
Replies: 0
Views: 1,960
Posted By annrose
DNase seq

Hi

I am trying to fix the Dnase seq protocol for xenopus embryos. Have anyone of you tried it in embryos. i am finding it hard to set it up with whole embryos. Is there any suggestion or...
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