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Search: Posts Made By: akitrav1
Forum: Bioinformatics 01-30-2019, 10:10 AM
Replies: 0
Views: 656
Posted By akitrav1
drop-outs in Cell-Ranger

Has anyone worked with CellRanger pipeline here? How does CellRanger account for drop-out events? Does it just filter them out or does it impute the missing values?
Forum: Bioinformatics 01-30-2019, 03:27 AM
Replies: 1
Views: 727
Posted By akitrav1
Basespace

Who are the usual users of Basespace from Illumina?
Forum: Bioinformatics 01-28-2019, 06:53 AM
Replies: 10
Views: 3,287
Posted By akitrav1
Data from 10x chromium does not give transcript...

Data from 10x chromium does not give transcript isoform level data but at a gene level data? Is it correct? Also, between Illumina-ddseq and 10x, what is the general consensus? Which one is better...
Forum: Bioinformatics 01-24-2019, 06:29 AM
Replies: 10
Views: 3,287
Posted By akitrav1
Can you analyze data from 10x genomics using...

Can you analyze data from 10x genomics using SeqGeq? How does Cell Ranger compare to that? Also isn't SeqGeq meant for Illlumina-Biorad product?
Forum: Bioinformatics 01-22-2019, 02:10 PM
Replies: 10
Views: 3,287
Posted By akitrav1
CellRanger vs Seurat

Hi,

I am very new to single cell sequencing and I have a couple of questions, especially to people using the Seurat package?

How does CellRanger compare to Seurat? Do they complement each other...
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