Forum: Bioinformatics
06-28-2016, 05:08 PM
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Replies: 1
Views: 1,358
Hi Jason,
Thanks for your interest in using...
Hi Jason,
Thanks for your interest in using ViralFusionSeq and I apologize that you could not run stock VFS against a whole virus database.
I am currently occupied in other projects so I could...
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Forum: Bioinformatics
01-16-2014, 06:14 PM
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Replies: 13
Views: 3,374
Dear IBseq,
First you need to run...
Dear IBseq,
First you need to run 1.VFS.sys.check.pl to see if the dependencies can be called successfully. If you have already done that, then it is nice.
Then you either run viral.fusion.pl...
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Forum: Bioinformatics
01-05-2014, 11:44 PM
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Replies: 3
Views: 2,280
Hi akhattri and dietmar13, I suppose there was...
Hi akhattri and dietmar13, I suppose there was some problem in processing the gzipped fastq files (that subsequently lead to the problem you see), I should have fixed the problem.
Would you mind...
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Forum: Bioinformatics
01-05-2014, 08:11 PM
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Replies: 13
Views: 3,374
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Forum: Bioinformatics
07-30-2013, 09:52 AM
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Replies: 13
Views: 3,374
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Forum: Bioinformatics
07-18-2013, 02:20 AM
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Replies: 13
Views: 3,374
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Forum: General
04-16-2013, 09:02 PM
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Replies: 8
Views: 124,309
Joann,
It would be good if we can do so!
...
Joann,
It would be good if we can do so!
AdaptiveGenome,
I think the GCAT would be very useful, not only on evaluating pipelines in a more interactive way. At certain time point, would you...
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Forum: Bioinformatics
03-07-2013, 12:41 AM
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Replies: 11
Views: 2,663
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Forum: Bioinformatics
01-29-2013, 09:43 PM
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Replies: 11
Views: 2,663
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Forum: Bioinformatics
01-29-2013, 07:18 AM
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Replies: 11
Views: 2,663
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Forum: Bioinformatics
01-29-2013, 06:20 AM
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Replies: 11
Views: 2,663
Another thought is,
machine and reagent...
Another thought is,
machine and reagent costs vary from country to country. I think it depends who you are (big institution or small, etc). And throughput depends on how much you can squeeze out.....
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Forum: Bioinformatics
01-29-2013, 06:16 AM
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Replies: 11
Views: 2,663
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Forum: Bioinformatics
01-18-2013, 09:15 AM
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Replies: 18
Views: 3,383
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Forum: Bioinformatics
01-14-2013, 04:50 AM
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Replies: 2
Views: 1,634
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Forum: Literature Watch
01-13-2013, 11:13 PM
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Replies: 0
Views: 1,593
ViralFusionSeq
ViralFusionSeq: Accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution:)
Summary: Insertional mutagenesis from virus infection is an important...
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Forum: Introductions
11-29-2012, 07:14 PM
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Replies: 2
Views: 1,547
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Forum: General
11-24-2012, 01:28 AM
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Replies: 8
Views: 124,309
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Forum: General
11-22-2012, 10:57 PM
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Replies: 8
Views: 124,309
One question, I am not sure about the Minimum...
One question, I am not sure about the Minimum information about array. How was that minimal information about microarray expression got accepted as the standard for publication? What was the turning...
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Forum: Bioinformatics
11-21-2012, 07:41 AM
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Replies: 2
Views: 1,967
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Forum: Sample Prep / Library Generation
11-20-2012, 07:25 PM
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Replies: 3
Views: 1,944
For general idea:...
For general idea: http://en.wikibooks.org/wiki/Next_Generation_Sequencing_(NGS)
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Forum: General
11-13-2012, 07:22 PM
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Replies: 8
Views: 124,309
The SEQwiki page:...
The SEQwiki page: http://seqanswers.com/wiki/Standard
The MINSEQE page by FGED: http://www.mged.org/minseqe/
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Forum: Illumina/Solexa
10-12-2012, 02:05 AM
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Replies: 6
Views: 4,151
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Forum: Service Providers
09-25-2012, 07:48 AM
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Replies: 22
Views: 33,121
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Forum: Service Providers
09-25-2012, 07:48 AM
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Replies: 22
Views: 33,121
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Forum: Bioinformatics
09-24-2012, 08:19 AM
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Replies: 7
Views: 3,288
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