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Search: Posts Made By: vromanr_2015
Forum: Bioinformatics 03-18-2015, 06:26 PM
Replies: 218
Views: 137,023
Posted By vromanr_2015
memory problems while running STAR

Hi, I'm trying to use genomegenerate but every time I try to run it I have this problem:

terminate called after throwing an instance of 'std::bad_alloc'
Aborted (core dumped)

I try to use...
Forum: Bioinformatics 03-16-2015, 05:47 AM
Replies: 17
Views: 6,361
Posted By vromanr_2015
Thanks for all the answers!!! and the link ...

Thanks for all the answers!!! and the link
sarvidsson: The GC plot looks terrible there are 3 peaks in the reads is not a normal distribution.
Forum: Bioinformatics 03-12-2015, 08:50 PM
Replies: 17
Views: 6,361
Posted By vromanr_2015
This is RNA-seq data from wheat, Could be an...

This is RNA-seq data from wheat, Could be an adapter that I don't have?
Forum: Bioinformatics 03-12-2015, 07:48 PM
Replies: 17
Views: 6,361
Posted By vromanr_2015
It didnt worked for me

sure! sorry about that.
Forum: Bioinformatics 03-12-2015, 07:38 PM
Replies: 17
Views: 6,361
Posted By vromanr_2015
it didnt worked for me

I tried to trim with Truseq3 fasta file and even after that I got the first 9bp with kmers. I tried to crop that but after that I got overrepresented reads (which I didn't have before).

any help...
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