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Forum: Bioinformatics 12-14-2015, 02:42 PM
Replies: 3
Views: 1,008
Posted By szy0931
update: I found a file of feature_table.txt has...

update:
I found a file of feature_table.txt has gene names. How can I convert the feature_table.txt file in to gtf or gff3 file?
Forum: Bioinformatics 12-14-2015, 02:03 PM
Replies: 3
Views: 1,008
Posted By szy0931
update I just found the gff file I used does...

update
I just found the gff file I used does not have the column gene name though it has gene name described in the last column with other information.
So, I think that is the reason
Forum: Bioinformatics 12-14-2015, 01:49 PM
Replies: 3
Views: 1,008
Posted By szy0931
cuffdiff does not gene name

Hi, all
I am analyzing my data in Galaxy using bowtie2--cufflinks--cuffmerge--cuffdiff.
I used the annotation gff file in the steps of cufflinks and cuffmerge.
Now in the result of cuffdiff, I...
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