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Forum: Bioinformatics 01-04-2016, 11:01 AM
Replies: 1
Views: 798
Posted By epigenereg
SRA files: can they be merged before unpacking?


I have to process several SRA files (from short read archive) which correspond to replicate experiments. What's the proper way:

1) Merge several SRA files together, then unpack, then...
Forum: General 12-24-2015, 01:33 PM
Replies: 3
Views: 1,136
Posted By epigenereg
I think the common practice (and for many...

I think the common practice (and for many journals a requirement) is to upload the data to GEO or alternative web archives, and give the referees access to this submission. If the referees want to...
Forum: Epigenetics 12-24-2015, 01:24 PM
Replies: 6
Views: 2,689
Posted By epigenereg
Did you try to report only uniquely mappable...

Did you try to report only uniquely mappable reads?
Forum: Epigenetics 12-24-2015, 01:18 PM
Replies: 1
Views: 2,480
Posted By epigenereg
I would suggest to try this:...

I would suggest to try this:
Forum: Bioinformatics 12-24-2015, 01:13 PM
Replies: 0
Views: 865
Posted By epigenereg
Scanning the genome for TF binding sites


Any idea of a bioinformatic tool (preferably web based), which scans a given genome for occurrence of a given TF binding sites? (Like FIMO, but simpler, with an option to select a genome...
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