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Forum: Sample Prep / Library Generation 10-03-2017, 10:22 PM
Replies: 3
Views: 3,109
Posted By favwiz
Exclamation Can't sequence ATAC-Seq libraries

We have prepared ATAC libraries for 24 samples following the protocol from Buenrostro et.al, using their custom Nextera-like primers and we have attempted to sequence these on NextSeq.
We're...
Forum: Bioinformatics 04-19-2017, 11:30 PM
Replies: 3
Views: 1,865
Posted By favwiz
Hi fin swimmer, Thanks for taking a look at...

Hi fin swimmer,
Thanks for taking a look at this. I've uploaded the combined gvcf that I'm looking at but have had to remove a few lines to reduce the file size. Let me know if you need more info....
Forum: Bioinformatics 04-19-2017, 12:05 AM
Replies: 3
Views: 1,865
Posted By favwiz
Missing genotype data in .vcf file

Hi all,
I'm trying to gather genotype data from .vcf files generated using GATK (as part of Illumina's MiSeq Reporter software), but I'm getting odd results.
I'm looking at one variant site, and...
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